BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026562
         (1232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   251   3e-64
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   247   5e-63
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   245   1e-62
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   244   2e-62
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...   244   2e-62

>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  251 bits (640), Expect = 3e-64
 Identities = 148/418 (35%), Positives = 209/418 (50%), Gaps = 10/418 (2%)
 Frame = -1

Query: 1226 PWMIFGDFNAVASLDEKIGGHSVLNRSMFDFNDFINDIGLIDLGFKGPKFTWCNN-RSYG 1050
            PW++ GDFN +    EK GG      +M +F   + D GL DLGF+G  FTW N+  S  
Sbjct: 377  PWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQE 436

Query: 1049 NHILERLDRALATPSWVDFFPEAKVFHIPNVSSDHLALGITLKNSEPLPK-----KPFRF 885
             +I ERLDRA+A P W   FP A+V +     SDH  + I L+      +       FRF
Sbjct: 437  GYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRF 496

Query: 884  YEMWLRDNTCKDVIKEGWDSVEDDLTMGIVGKKQEAT----KEKLTVWNKRQFGNIFCEI 717
               WL +   K+V+KE WD     ++ G+ G    A+       L+ W+    G++   +
Sbjct: 497  EAAWLEEEKFKEVVKEAWD-----VSAGLQGLPVHASLAGVAAGLSSWSSNVLGDLEKRV 551

Query: 716  RNVKKKLESLMTHEMNERNYKSIXXXXXXXXXXXXXEASLWRQRSGQVWVRDYARNTKFF 537
            + VKK+LE+     ++                        W+QR+   W+    RNT FF
Sbjct: 552  KKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQRAHTNWLNKGDRNTSFF 611

Query: 536  HISTIYRRRKNRIEKLREDDGSWKKGREEVGKTINNFFTKLFETQYPQTDNSILDLFQPI 357
            H S   RRR+NRI KLR +DGSW +  E+    I  FF +LF +   Q    +LD+    
Sbjct: 612  HASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTSNGGQNSQKLLDVVDRK 671

Query: 356  ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 177
            ++   NE L    + EE+   +  +  LKAPGPDG    FY+ CWD+VG  +   V +  
Sbjct: 672  VSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTDEVLEVL 731

Query: 176  LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKII 3
                +P   N+  I LIPK+  P+ I   RPISLCN  YK++SK+LANRLK  L  +I
Sbjct: 732  RGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVI 789


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  247 bits (630), Expect = 5e-63
 Identities = 133/409 (32%), Positives = 226/409 (55%), Gaps = 1/409 (0%)
 Frame = -1

Query: 1226 PWMIFGDFNAVASLDEKIGGHSVLNRSMFDFNDFINDIGLIDLGFKGPKFTWCNNRSYGN 1047
            PW++ GDFN      E           M DF + +++  L D+GF+G  +T+CN +  G 
Sbjct: 86   PWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCNMQREGR 145

Query: 1046 HILERLDRALATPSWVDFFPEAKVFHIPNVSSDHLALGITLKNSE-PLPKKPFRFYEMWL 870
            ++  RLDR +A+P+W   FP+A + H+   SSDH  L +  + +    P K  R+ E+W 
Sbjct: 146  NVKVRLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWE 205

Query: 869  RDNTCKDVIKEGWDSVEDDLTMGIVGKKQEATKEKLTVWNKRQFGNIFCEIRNVKKKLES 690
            R+++  +VI+E W    D  T+G +  K + T  KL  W+K + GN+  +I+++++KL  
Sbjct: 206  RESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGE 265

Query: 689  LMTHEMNERNYKSIXXXXXXXXXXXXXEASLWRQRSGQVWVRDYARNTKFFHISTIYRRR 510
            L    + + +   +             E   W+QRS   W+++   NT++FH+   +R +
Sbjct: 266  LRNIGLLDTD-NEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAK 324

Query: 509  KNRIEKLREDDGSWKKGREEVGKTINNFFTKLFETQYPQTDNSILDLFQPIITNRENELL 330
            KN+I+KL+++DGS    ++E+ +   +FF +L+         ++L++F   I+ + N  L
Sbjct: 325  KNKIKKLKKNDGSTTMNKKEMKEISRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADL 384

Query: 329  GVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFFLYNTLPPDL 150
                +DEEI   + ++ PLKAPGPDGF   F QR W ++   +I  V++FF    +   +
Sbjct: 385  IKPFTDEEISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFFEDEVMQEGV 444

Query: 149  NETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKII 3
            N+T I +IPK    + +  FRPISLCN  YK+++K L NR++  L +II
Sbjct: 445  NDTVIVMIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNRMRPMLQEII 493


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  245 bits (626), Expect = 1e-62
 Identities = 144/411 (35%), Positives = 206/411 (50%), Gaps = 3/411 (0%)
 Frame = -1

Query: 1226 PWMIFGDFNAVASLDEKIGGHSVLNRSMFDFNDFINDIGLIDLGFKGPKFTWCNNRSYGN 1047
            P + FGDFN + S++EK GG     R M  F + I+D  + DLG+ G +FTW    S   
Sbjct: 131  PVLFFGDFNEITSIEEKEGGAPRCERVMDAFREVIDDCAVKDLGYVGNRFTWQRGNSPST 190

Query: 1046 HILERLDRALATPSWVDFFPEAKVFHIPNVSSDH--LALGITLKNSEPLPKKPFRFYEMW 873
             I ERLDR LA   W D FP  +V H+P   SDH  L L   + +S     K F+F  MW
Sbjct: 191  LIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVNDSFRRGNKLFKFEAMW 250

Query: 872  LRDNTCKDVIKEGWD-SVEDDLTMGIVGKKQEATKEKLTVWNKRQFGNIFCEIRNVKKKL 696
            L    C  +++E W+ S  +D+T      + +     L+ W  + FGN+    +     L
Sbjct: 251  LSKEECGKIVEEAWNGSAGEDIT-----NRLDEVSRSLSTWATKTFGNLKKRKKEALTLL 305

Query: 695  ESLMTHEMNERNYKSIXXXXXXXXXXXXXEASLWRQRSGQVWVRDYARNTKFFHISTIYR 516
              L   + +    +               E S W  R+    +RD  +NTK+FH     R
Sbjct: 306  NGLQQRDPDASTLEQCRIVSGDLDEIHRLEESYWHARARANEIRDGDKNTKYFHHKASQR 365

Query: 515  RRKNRIEKLREDDGSWKKGREEVGKTINNFFTKLFETQYPQTDNSILDLFQPIITNRENE 336
            +R+N I +L +++G WKKGREE+   + ++F  LF T  P      L+     ++   N 
Sbjct: 366  KRRNTINELLDENGVWKKGREEICGVVQHYFEGLFATDSPVNMELALEGLSHCVSTDMNT 425

Query: 335  LLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFFLYNTLPP 156
             L + PS +E+   +  +HP KAPG DG   +F+Q+ W I+G  +I  VQ ++       
Sbjct: 426  ALLMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQKFWHILGSDVISFVQSWWRGMGDLG 485

Query: 155  DLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKII 3
             +N+T I LIPK   P  +  FRPISLC   YKI+SK LANRLK  L  II
Sbjct: 486  VVNKTCIVLIPKCDHPQSMKDFRPISLCTVLYKILSKTLANRLKVILPAII 536


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  244 bits (624), Expect = 2e-62
 Identities = 141/413 (34%), Positives = 212/413 (51%), Gaps = 5/413 (1%)
 Frame = -1

Query: 1226 PWMIFGDFNAVASLDEKIGGHSVLNRSMFDFNDFINDIGLIDLGFKGPKFTWCNNRSYGN 1047
            PW+  GDFN +    EK GG    +R    F + + +   +DLGF G +FTW NNR    
Sbjct: 136  PWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYEFTWTNNRGGDA 195

Query: 1046 HILERLDRALATPSWVDFFPEAKVFHIPNVSSDHLALGITLKNSEPLP-----KKPFRFY 882
            +I ERLDR +A   W   FP + V H+P   SDH+ +  ++K ++         K FRF 
Sbjct: 196  NIQERLDRFVANDLWKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRTKKSKRFRFE 255

Query: 881  EMWLRDNTCKDVIKEGWDSVEDDLTMGIVGKKQEATKEKLTVWNKRQFGNIFCEIRNVKK 702
             MWLR+    +V+KE W    D       G     T  KL  W+K++FG++  EIR  + 
Sbjct: 256  AMWLREGESDEVVKETWMRGTD------AGINLARTANKLLSWSKQKFGHVAKEIRMCQH 309

Query: 701  KLESLMTHEMNERNYKSIXXXXXXXXXXXXXEASLWRQRSGQVWVRDYARNTKFFHISTI 522
            +++ LM  E +E N   +             E   W QRS Q W++   +NTKFFH    
Sbjct: 310  QMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKAS 369

Query: 521  YRRRKNRIEKLREDDGSWKKGREEVGKTINNFFTKLFETQYPQTDNSILDLFQPIITNRE 342
            +R ++N + ++R + G W +  ++V +   ++F  LF++      + IL++ +P IT+  
Sbjct: 370  HREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVKPQITDEL 429

Query: 341  NELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFFLYNTL 162
               L      EE+   + ++HP KAPGPDG   +FYQ  WD +G  +   V +       
Sbjct: 430  GTQLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQHFWDTIGEDVTTKVLNMLNNVDN 489

Query: 161  PPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKII 3
               +N+T I LIPK    +    FRPISLCN  YKI++K+LANR+K  L  +I
Sbjct: 490  IGAVNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPMVI 542


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  244 bits (624), Expect = 2e-62
 Identities = 132/409 (32%), Positives = 226/409 (55%), Gaps = 1/409 (0%)
 Frame = -1

Query: 1226 PWMIFGDFNAVASLDEKIGGHSVLNRSMFDFNDFINDIGLIDLGFKGPKFTWCNNRSYGN 1047
            PW++ GDFN      E           M DF + +++  L D+GF+G  +T+CN +  G 
Sbjct: 111  PWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCNMQREGR 170

Query: 1046 HILERLDRALATPSWVDFFPEAKVFHIPNVSSDHLALGITLKNSE-PLPKKPFRFYEMWL 870
            ++  RLDR +A+P+W   FP+A + H+   SSDH  L +  + +    P K  R+ E+W 
Sbjct: 171  NVKVRLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWE 230

Query: 869  RDNTCKDVIKEGWDSVEDDLTMGIVGKKQEATKEKLTVWNKRQFGNIFCEIRNVKKKLES 690
            R+++  +VI+E W    D  T+G +  K + T  KL  W+K + GN+  +I+++++KL  
Sbjct: 231  RESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGE 290

Query: 689  LMTHEMNERNYKSIXXXXXXXXXXXXXEASLWRQRSGQVWVRDYARNTKFFHISTIYRRR 510
            L    + + +   +             E   W+QRS   W+++   NT++FH+   +R +
Sbjct: 291  LRNIGLLDTD-NEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAK 349

Query: 509  KNRIEKLREDDGSWKKGREEVGKTINNFFTKLFETQYPQTDNSILDLFQPIITNRENELL 330
            KN+I+KL+++DGS    ++E+ +   +FF +L+         ++L++F   I+ + N  L
Sbjct: 350  KNKIKKLKKNDGSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADL 409

Query: 329  GVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFFLYNTLPPDL 150
                ++EEI   + ++ PLKAPGPDGF   F QR W ++   +I  V++FF    +   +
Sbjct: 410  IKPFTNEEISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFFEDEVMQEGV 469

Query: 149  NETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKII 3
            N+T I +IPK    + +  FRPISLCN  YK+++K L NR++  L +II
Sbjct: 470  NDTVIVMIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNRMRPMLQEII 518