BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026548
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   190   9e-47
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   174   7e-42
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,...   169   3e-40
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...   166   1e-39
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...   166   1e-39

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  190 bits (483), Expect = 9e-47
 Identities = 92/133 (69%), Positives = 110/133 (82%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           VH+IAK  GL+ DVLV+NSLLKMYIDCGSIKDAR VF++M SKDVISWT IF  YVKNG 
Sbjct: 216 VHEIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGG 275

Query: 183 FNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQNA 362
           FNE LKLFR M+ +G KPDS+++S +LPAC R AA K GKEIHAY +RN +D  + VQNA
Sbjct: 276 FNEGLKLFRQMSMEGVKPDSLAISSILPACGRGAAHKQGKEIHAYLLRNGIDLNVTVQNA 335

Query: 363 LMDMYMKSGFLES 401
           ++DMY+KSGF+ES
Sbjct: 336 VLDMYVKSGFIES 348



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 35/132 (26%), Positives = 69/132 (52%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           VH  A   GL  +  V ++LL+MY        A+LVF K + ++ +SWT I   Y+   +
Sbjct: 115 VHGHALKLGLSSESYVISALLEMYGRLDGANAAKLVFCKSARRNSVSWTLISRLYIMEDK 174

Query: 183 FNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQNA 362
              A+ +F+ M    ++ D +++   + AC  + + + G+ +H    +  L+ ++ V N+
Sbjct: 175 PGLAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYVHEIAKKCGLEADVLVSNS 234

Query: 363 LMDMYMKSGFLE 398
           L+ MY+  G ++
Sbjct: 235 LLKMYIDCGSIK 246



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +3

Query: 27  GLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLF 206
           G+DL+V V N++L MY+  G I+ A  +F  M  +D ISWT +   Y  +G+    + LF
Sbjct: 325 GIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDAISWTVMILGYSLHGQGELGVDLF 384

Query: 207 RLM-NSQGTKPDSVSVSGVLPACARIAAGKNGK 302
           R M  +   + D ++ +  L AC      + G+
Sbjct: 385 RKMEKNSSVEIDQIAYAAALHACTTARLVEQGR 417


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  174 bits (441), Expect = 7e-42
 Identities = 86/132 (65%), Positives = 102/132 (77%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           VHD+A+ F L+ D+LV+NSLLKM IDC  ++DAR  FN+M++KDVISWT I   YVK GE
Sbjct: 217 VHDVARKFRLESDILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICGYVKKGE 276

Query: 183 FNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQNA 362
           FNEALKLFR MN  G KPDS+SVS VLPACAR  A KNGKEIH Y++RN +D  L VQNA
Sbjct: 277 FNEALKLFRKMNMDGIKPDSLSVSSVLPACARTVAHKNGKEIHGYSLRNGMDNNLIVQNA 336

Query: 363 LMDMYMKSGFLE 398
             DMY KSG ++
Sbjct: 337 TTDMYAKSGLVD 348


>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 686

 Score =  169 bits (427), Expect = 3e-40
 Identities = 82/133 (61%), Positives = 105/133 (78%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           +H  AK   L+ D+LV+NSLLKMY+DC  I+DAR  F++M +KD+ISWT I + YVK GE
Sbjct: 220 LHGFAKKCRLEFDILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEIINGYVKIGE 279

Query: 183 FNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQNA 362
           FNEALKLFR MN  G +PDS+S+S +LPACAR AA K G+EIHAY +RN ++  L +QNA
Sbjct: 280 FNEALKLFRQMNIAGIRPDSLSLSTILPACARPAAHKLGREIHAYLLRNGIELNLMLQNA 339

Query: 363 LMDMYMKSGFLES 401
           L+DMY+KSGF+ES
Sbjct: 340 LIDMYVKSGFMES 352



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 38/132 (28%), Positives = 66/132 (50%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           +H  A  FG   D  V +SL+  Y    S   AR +F+   SK+ +SWT +   Y+   +
Sbjct: 119 IHAQALKFGFSSDPYVISSLIDFYGHLDSTDAARSLFDNSPSKNSVSWTVLARLYLMQNK 178

Query: 183 FNEALKLFRLMNSQGTKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQNA 362
            +  L LF  M    +  D V+++  L AC  + +  +GK +H +  +  L+ ++ V N+
Sbjct: 179 PDVVLSLFYQMLDFNSLFDPVALATALRACGMLRSMHHGKILHGFAKKCRLEFDILVSNS 238

Query: 363 LMDMYMKSGFLE 398
           L+ MY+    +E
Sbjct: 239 LLKMYVDCHCIE 250



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
 Frame = +3

Query: 27  GLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLF 206
           G++L++++ N+L+ MY+  G ++ A L+F +M  KDVISWT +   +  +G+    ++LF
Sbjct: 329 GIELNLMLQNALIDMYVKSGFMESASLIFVRMKEKDVISWTVMILGFSLHGQGELGVELF 388

Query: 207 -RLMNSQGTKPDSVSVSGVLPACARIAAGKNGK 302
            RL      + D    + VL  C      + GK
Sbjct: 389 RRLEKDPSIEIDQYIYAAVLRCCTTACMVEEGK 421


>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score =  166 bits (421), Expect = 1e-39
 Identities = 79/134 (58%), Positives = 102/134 (76%), Gaps = 1/134 (0%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           +H +A+  GL+ ++LV+NSLLKMYIDC SIKDAR  F++M SKD+ISWT + H YVK G 
Sbjct: 182 IHHLARVHGLEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGG 241

Query: 183 FNEALKLFRLMNSQG-TKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQN 359
            NEA KLFR MN  G  KPD  ++S +LPAC R+AA K+GKEIH Y ++N  D+ L VQN
Sbjct: 242 INEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHKHGKEIHGYVVKNAFDENLIVQN 301

Query: 360 ALMDMYMKSGFLES 401
           AL+DMY+KSG ++S
Sbjct: 302 ALVDMYVKSGCIQS 315


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score =  166 bits (421), Expect = 1e-39
 Identities = 79/134 (58%), Positives = 102/134 (76%), Gaps = 1/134 (0%)
 Frame = +3

Query: 3   VHDIAKFFGLDLDVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGE 182
           +H +A+  GL+ ++LV+NSLLKMYIDC SIKDAR  F++M SKD+ISWT + H YVK G 
Sbjct: 182 IHHLARVHGLEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGG 241

Query: 183 FNEALKLFRLMNSQG-TKPDSVSVSGVLPACARIAAGKNGKEIHAYTIRNELDKELAVQN 359
            NEA KLFR MN  G  KPD  ++S +LPAC R+AA K+GKEIH Y ++N  D+ L VQN
Sbjct: 242 INEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHKHGKEIHGYVVKNAFDENLIVQN 301

Query: 360 ALMDMYMKSGFLES 401
           AL+DMY+KSG ++S
Sbjct: 302 ALVDMYVKSGCIQS 315