BLASTX nr result
ID: Coptis24_contig00026532
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026532
(729 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK26521.1| unknown [Picea sitchensis] 212 7e-53
ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containi... 210 2e-52
ref|XP_002301939.1| predicted protein [Populus trichocarpa] gi|2... 209 6e-52
ref|XP_002872815.1| pentatricopeptide repeat-containing protein ... 207 1e-51
ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containi... 206 3e-51
>gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 212 bits (539), Expect = 7e-53
Identities = 101/193 (52%), Positives = 137/193 (70%)
Frame = +2
Query: 8 AFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACAH 187
A E+F K+L+ DV S+N+M++G A HG K+A LF M Q V PN +TFV +LS C+H
Sbjct: 52 AQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSH 111
Query: 188 SGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTWG 367
+GLV+EGR YF M + K+EHYSCMVDL GRAG L+EA N I MP++P AS WG
Sbjct: 112 AGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWG 171
Query: 368 ALLGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVLANLYADKRMWNSVTRVRRVMKEKS 547
+LLGACR+HGNI LAE ++L E+ PEN G Y +L+N+YA W+ +VR++MK++S
Sbjct: 172 SLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRS 231
Query: 548 LFKTPGSSWVDVR 586
+ K PG SW++V+
Sbjct: 232 VKKEPGCSWIEVQ 244
>ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 210 bits (535), Expect = 2e-52
Identities = 96/197 (48%), Positives = 139/197 (70%)
Frame = +2
Query: 8 AFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACAH 187
A+++F +M +++V SY+SM+ G+A HG A A LF M + + PN VTF+G+L+AC+H
Sbjct: 328 AYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSH 387
Query: 188 SGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTWG 367
+G+VE+G++ F +M + V +HY+CMVDLLGRAG LEEA NL+ MP+ P WG
Sbjct: 388 AGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWG 447
Query: 368 ALLGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVLANLYADKRMWNSVTRVRRVMKEKS 547
ALLGACRIHGN +A++ A LFE+EP GNY +L+N+YA W+ V++VR++M+ K
Sbjct: 448 ALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKG 507
Query: 548 LFKTPGSSWVDVRKASV 598
L K PG SWV+ +K +
Sbjct: 508 LKKNPGCSWVEGKKGII 524
Score = 58.2 bits (139), Expect = 2e-06
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = +2
Query: 8 AFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACAH 187
A E+F + KD++++ +M+TGYA + ++A +F M V + VT VG++SACA
Sbjct: 225 ASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQ 284
Query: 188 SGLVEEGRRYFRLMLDLGYVELKSEHY-SCMVDLLGRAGHLEEAHNLILGMPIKPVASTW 364
G + + G+ + S ++D+ + G +E+A+ + M + V S +
Sbjct: 285 LGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYS-Y 343
Query: 365 GALLGACRIHGNIGLAEVVAQRLFEME 445
+++ +HG G A + + + E
Sbjct: 344 SSMIVGFAMHGLAGAAMELFDEMLKTE 370
>ref|XP_002301939.1| predicted protein [Populus trichocarpa] gi|222843665|gb|EEE81212.1|
predicted protein [Populus trichocarpa]
Length = 613
Score = 209 bits (531), Expect = 6e-52
Identities = 94/197 (47%), Positives = 138/197 (70%)
Frame = +2
Query: 14 EIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACAHSG 193
++F M+ D +++ +ML+ YA HG ++A F +M ++ VVP+ VTF LLSAC+HSG
Sbjct: 297 KVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSG 356
Query: 194 LVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTWGAL 373
LVEEG+ YF++M + VEL+ EHYSCMVDLLGR+GHL +A+ LI MP++P + WGAL
Sbjct: 357 LVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGAL 416
Query: 374 LGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVLANLYADKRMWNSVTRVRRVMKEKSLF 553
+GACR+ GNI L + VA+RLF ++P +S NY L+N+Y+ W ++VR +MKE+ L
Sbjct: 417 IGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLI 476
Query: 554 KTPGSSWVDVRKASVCF 604
+ PG S+++ CF
Sbjct: 477 RNPGCSYIEHGNKIHCF 493
Score = 65.1 bits (157), Expect = 1e-08
Identities = 41/137 (29%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Frame = +2
Query: 8 AFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFS-LFSMMSQDSVVPNSVTFVGLLSACA 184
A E+F ++ KD++S+NS+++G++ D LF M + + PN VT + ++SACA
Sbjct: 92 ALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACA 151
Query: 185 HSGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTW 364
G ++ G+ + + G + L+ + + +++L G+ G LE A L GM ++ + S W
Sbjct: 152 GVGELDVGKCIHGIAVKSGML-LEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVS-W 209
Query: 365 GALLGACRIHGNIGLAE 415
+++ +H ++GLAE
Sbjct: 210 NSMVA---VHVHMGLAE 223
>ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297318652|gb|EFH49074.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 776
Score = 207 bits (528), Expect = 1e-51
Identities = 95/202 (47%), Positives = 138/202 (68%)
Frame = +2
Query: 5 KAFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACA 184
+A ++F +M KD++S+N+M+ GY+ HG ++A F M ++ + P+ T V +LSAC+
Sbjct: 457 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACS 516
Query: 185 HSGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTW 364
H+GLV++GR+YF M V S+HY+CMVDLLGRAG LEEAHNL+ MP +P A+ W
Sbjct: 517 HTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIW 576
Query: 365 GALLGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVLANLYADKRMWNSVTRVRRVMKEK 544
G LLGA R+HGN LAE A ++F MEPENSG Y +L+NLYA W V ++R M++K
Sbjct: 577 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636
Query: 545 SLFKTPGSSWVDVRKASVCFPI 610
+ K PG SW++++ + F +
Sbjct: 637 GVKKVPGYSWIEIQNKTHTFSV 658
Score = 55.8 bits (133), Expect = 9e-06
Identities = 37/131 (28%), Positives = 67/131 (51%)
Frame = +2
Query: 5 KAFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACA 184
+A +F KM K+D +S+ +M+ GY+ G + +A LF +M ++ N +F LS CA
Sbjct: 356 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCA 415
Query: 185 HSGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTW 364
+E G++ ++ GY E + ++ + + G +EEA++L M K + S W
Sbjct: 416 DVVALELGKQLHGRLVKGGY-ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-W 473
Query: 365 GALLGACRIHG 397
++ HG
Sbjct: 474 NTMIAGYSRHG 484
>ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Cucumis sativus]
Length = 776
Score = 206 bits (525), Expect = 3e-51
Identities = 96/202 (47%), Positives = 140/202 (69%)
Frame = +2
Query: 5 KAFEIFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACA 184
+AF++F + +KD++S+N+M+ GYA HG K+A +LF M ++ P+ VT VG+LSAC+
Sbjct: 458 EAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACS 516
Query: 185 HSGLVEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTW 364
H+GLV++G YF M + ++HY+CM+DLLGRAG L+EA NL+ MP P A+TW
Sbjct: 517 HTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATW 576
Query: 365 GALLGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVLANLYADKRMWNSVTRVRRVMKEK 544
GALLGA RIHG+ L E A+++FEMEP+NSG Y +L+NLYA W V +R M++K
Sbjct: 577 GALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636
Query: 545 SLFKTPGSSWVDVRKASVCFPI 610
+ K PG SWV+++ + F +
Sbjct: 637 GVKKVPGYSWVEIQNKTHIFTV 658
Score = 57.0 bits (136), Expect = 4e-06
Identities = 33/127 (25%), Positives = 66/127 (51%)
Frame = +2
Query: 17 IFVKMLKKDVISYNSMLTGYATHGDAKQAFSLFSMMSQDSVVPNSVTFVGLLSACAHSGL 196
+F +M ++D IS+ +M++GYA G +++A LF M +D + N LS+CA
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAA 420
Query: 197 VEEGRRYFRLMLDLGYVELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTWGALL 376
+E G++ ++ G+ + + ++ + G+ G +EEA ++ + K + S W ++
Sbjct: 421 LELGKQLHGRLVKAGF-QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS-WNTMI 478
Query: 377 GACRIHG 397
HG
Sbjct: 479 AGYARHG 485