BLASTX nr result
ID: Coptis24_contig00026506
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026506 (506 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI21155.3| unnamed protein product [Vitis vinifera] 69 5e-10 emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera] 69 5e-10 ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-co... 65 4e-09 ref|XP_003548683.1| PREDICTED: U2 snRNP-associated SURP motif-co... 64 1e-08 ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|2... 62 5e-08 >emb|CBI21155.3| unnamed protein product [Vitis vinifera] Length = 941 Score = 68.6 bits (166), Expect = 5e-10 Identities = 31/39 (79%), Positives = 35/39 (89%) Frame = +3 Query: 387 RGRGKSRNIDHFMEELKHKQKLMRERRNHERDQWREGNH 503 R +GKSRNIDHFMEELKH+Q+ MRERRN ERDQWR+G H Sbjct: 115 REKGKSRNIDHFMEELKHEQE-MRERRNQERDQWRDGRH 152 >emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera] Length = 1384 Score = 68.6 bits (166), Expect = 5e-10 Identities = 31/39 (79%), Positives = 35/39 (89%) Frame = +3 Query: 387 RGRGKSRNIDHFMEELKHKQKLMRERRNHERDQWREGNH 503 R +GKSRNIDHFMEELKH+Q+ MRERRN ERDQWR+G H Sbjct: 233 REKGKSRNIDHFMEELKHEQE-MRERRNQERDQWRDGRH 270 >ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like [Cucumis sativus] gi|449493301|ref|XP_004159248.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like [Cucumis sativus] Length = 961 Score = 65.5 bits (158), Expect = 4e-09 Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 6/61 (9%) Frame = +3 Query: 339 IPHPLVSSSH*FDSQV------RGRGKSRNIDHFMEELKHKQKLMRERRNHERDQWREGN 500 IP PL S D + + +GKSRNIDHFMEELKH+Q+L RERRN +R+ WREG Sbjct: 92 IPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQEL-RERRNQDREHWREGR 150 Query: 501 H 503 H Sbjct: 151 H 151 >ref|XP_003548683.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like [Glycine max] Length = 971 Score = 63.9 bits (154), Expect = 1e-08 Identities = 28/37 (75%), Positives = 33/37 (89%) Frame = +3 Query: 393 RGKSRNIDHFMEELKHKQKLMRERRNHERDQWREGNH 503 +GKSRNIDHFMEELKH+Q+ MRERRN ER+ WR+G H Sbjct: 117 KGKSRNIDHFMEELKHEQE-MRERRNQEREHWRDGRH 152 >ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|222865775|gb|EEF02906.1| predicted protein [Populus trichocarpa] Length = 955 Score = 62.0 bits (149), Expect = 5e-08 Identities = 27/37 (72%), Positives = 32/37 (86%) Frame = +3 Query: 393 RGKSRNIDHFMEELKHKQKLMRERRNHERDQWREGNH 503 +GK+RNIDHFMEELKH+ + MRERRN ER+ WREG H Sbjct: 117 KGKTRNIDHFMEELKHEHE-MRERRNQEREHWREGRH 152