BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026459
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L...    96   3e-18
ref|XP_004137301.1| PREDICTED: ubiquitin-60S ribosomal protein L...    96   3e-18
pdb|3IZR|PP Chain p, Localization Of The Large Subunit Ribosomal...    96   3e-18
ref|XP_002530306.1| ubiquitin, putative [Ricinus communis] gi|25...    96   3e-18
tpe|CAI56329.1| TPA: ubiquitin-60S ribosomal L40 fusion protein ...    96   3e-18

>ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis
           sativus]
          Length = 208

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 227 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 102
           RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 167 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 208


>ref|XP_004137301.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis
           sativus]
          Length = 93

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 227 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 102
           RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 52  RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 93


>pdb|3IZR|PP Chain p, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 53

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 227 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 102
           RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 11  RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52


>ref|XP_002530306.1| ubiquitin, putative [Ricinus communis]
           gi|255578975|ref|XP_002530340.1| ubiquitin, putative
           [Ricinus communis] gi|356509194|ref|XP_003523336.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|356516113|ref|XP_003526741.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|356572584|ref|XP_003554448.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|449438865|ref|XP_004137208.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|449456437|ref|XP_004145956.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|449497417|ref|XP_004160396.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|71040673|gb|AAZ20285.1| ubiquitin
           fusion protein [Arachis hypogaea]
           gi|147769165|emb|CAN60770.1| hypothetical protein
           VITISV_012429 [Vitis vinifera]
           gi|148908659|gb|ABR17437.1| unknown [Picea sitchensis]
           gi|192910738|gb|ACF06477.1| ubiquitin fusion protein
           [Elaeis guineensis] gi|223530144|gb|EEF32056.1|
           ubiquitin, putative [Ricinus communis]
           gi|223530162|gb|EEF32073.1| ubiquitin, putative [Ricinus
           communis] gi|284433784|gb|ADB85098.1| ubiquitin C
           variant [Jatropha curcas] gi|297740140|emb|CBI30322.3|
           unnamed protein product [Vitis vinifera]
           gi|330318561|gb|AEC10952.1| ubiquitin fusion protein
           [Camellia sinensis] gi|388516721|gb|AFK46422.1| unknown
           [Lotus japonicus]
          Length = 128

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 227 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 102
           RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 87  RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 128


>tpe|CAI56329.1| TPA: ubiquitin-60S ribosomal L40 fusion protein [Vitis vinifera]
          Length = 128

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 227 RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 102
           RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 87  RKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 128