BLASTX nr result

ID: Coptis24_contig00026458 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026458
         (481 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277684.1| PREDICTED: uncharacterized protein LOC100257...    61   1e-07
ref|XP_003529839.1| PREDICTED: uncharacterized protein LOC100808...    58   7e-07
ref|XP_002331180.1| predicted protein [Populus trichocarpa] gi|2...    55   5e-06
ref|XP_002304121.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06

>ref|XP_002277684.1| PREDICTED: uncharacterized protein LOC100257848 [Vitis vinifera]
          Length = 266

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +3

Query: 213 LLRTLLHKKIYPQKSS-TILVKKYLGDRHSSKNNKDDQ*EEKRDTGCKWVNTDSK 374
           +LR LLHKKIYPQ SS T+ + +YL +RH  K++ +D+  EK   G KWV TDS+
Sbjct: 206 ILRLLLHKKIYPQSSSSTLSIMRYLANRHMPKSDNEDEVNEKVTEGSKWVKTDSE 260


>ref|XP_003529839.1| PREDICTED: uncharacterized protein LOC100808146 [Glycine max]
          Length = 263

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +3

Query: 213 LLRTLLHKKIYPQKSS-TILVKKYLGDRHSSKNNKDDQ*EEKRDTGCKWVNTDSK 374
           LLRT+LHKKIY Q SS + LVKK + D+  ++   +D+ +E+   GCKWV TDS+
Sbjct: 203 LLRTMLHKKIYTQNSSRSPLVKKGIEDKKMTRKRNEDESDERNGDGCKWVKTDSE 257


>ref|XP_002331180.1| predicted protein [Populus trichocarpa] gi|222873301|gb|EEF10432.1|
           predicted protein [Populus trichocarpa]
          Length = 312

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
 Frame = +3

Query: 213 LLRTLLHKKIYPQKSST-ILVKKYLGDRHSSKNNK-DDQ*EEKRDTGCKWVNTDSKSKVF 386
           LLRTLLHKKI PQ +S    +KKY+ D+  SK  K DD+ + K   G KWV TDS+ K F
Sbjct: 209 LLRTLLHKKINPQSTSRPSSMKKYIEDKKISKKEKEDDEKQYKTSDGSKWVKTDSECK-F 267

Query: 387 LLHLL 401
           +  LL
Sbjct: 268 IFSLL 272


>ref|XP_002304121.1| predicted protein [Populus trichocarpa] gi|222841553|gb|EEE79100.1|
           predicted protein [Populus trichocarpa]
          Length = 254

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
 Frame = +3

Query: 213 LLRTLLHKKIYPQKSS-TILVKKYLGDRHSSKNNK-DDQ*EEKRDTGCKWVNTDSK 374
           LLRTLLHKKI PQ +S    +KKY+ DR + K +K DD+  +K   G KWV TDS+
Sbjct: 193 LLRTLLHKKINPQSTSRASSMKKYIEDRSTPKKDKEDDEKRDKTSNGSKWVKTDSE 248


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