BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026457
         (608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             109   4e-27
gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o...   115   8e-24
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]         113   3e-23
emb|CAN66579.1| hypothetical protein VITISV_024677 [Vitis vinifera]   112   7e-23
emb|CAH67120.1| H0502G05.11 [Oryza sativa Indica Group]               111   1e-22

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  109 bits (272), Expect(2) = 4e-27
 Identities = 53/133 (39%), Positives = 80/133 (60%)
 Frame = +2

Query: 209  PSNIRRNKLKEKQTKIEQGEKVNLGTNIEPKFVYVGADLDPKLKEQLVKFLSLNKDVFIW 388
            P   +      +++++ + E VN+  +   + V VGA++ P ++ +L+  L  N   F W
Sbjct: 740  PKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAW 799

Query: 389  SYIDMPGIDPQVACHKLNVNPNVKPIKQRLHKLALKF*KAINKEIEKLKNVGFIREVKYP 568
            S  DM GIDP +  H+LNV+P  KP+KQ+  KL  +  +A+N+E+EKL   G I EVKYP
Sbjct: 800  SIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYP 859

Query: 569  TWLANIVAIPKKN 607
             WLAN V + KKN
Sbjct: 860  EWLANPVVVKKKN 872



 Score = 37.7 bits (86), Expect(2) = 4e-27
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 3   GRRWIHKIQAVPSTLDQVLHFPGPQGIIELRS 98
           G  WIH++QA+PST  Q + FP   GI  LR+
Sbjct: 708 GTPWIHQMQAIPSTYHQCVKFPTHNGIFTLRA 739


>gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis]
          Length = 1181

 Score =  115 bits (287), Expect = 8e-24
 Identities = 49/113 (43%), Positives = 78/113 (69%)
 Frame = +2

Query: 269 KVNLGTNIEPKFVYVGADLDPKLKEQLVKFLSLNKDVFIWSYIDMPGIDPQVACHKLNVN 448
           ++N+G    PK +++  DL    KE L+  +    DVF W+Y DMPG+DP+VA H+LN++
Sbjct: 618 QINMGDESNPKPIFIAEDLSSSEKENLISLIREYIDVFAWNYEDMPGLDPKVAMHRLNID 677

Query: 449 PNVKPIKQRLHKLALKF*KAINKEIEKLKNVGFIREVKYPTWLANIVAIPKKN 607
           P+VKP+KQ+  +   +  ++I  E++KL + GF+RE ++P W+ANIV +PKKN
Sbjct: 678 PDVKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKKN 730


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score =  113 bits (282), Expect = 3e-23
 Identities = 49/113 (43%), Positives = 77/113 (68%)
 Frame = +2

Query: 269 KVNLGTNIEPKFVYVGADLDPKLKEQLVKFLSLNKDVFIWSYIDMPGIDPQVACHKLNVN 448
           +VN+G   +PK +++  DL    KE L+  +    DVF W+Y DMPG+DP+VA H LN++
Sbjct: 114 QVNMGDEHDPKPIFIAEDLSSSEKEDLISLIREYIDVFAWNYEDMPGLDPKVAMHHLNID 173

Query: 449 PNVKPIKQRLHKLALKF*KAINKEIEKLKNVGFIREVKYPTWLANIVAIPKKN 607
           P+ KP+KQ+  +   +  ++I  E++KL + GF+RE ++P W+ANIV +PKKN
Sbjct: 174 PDAKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKKN 226


>emb|CAN66579.1| hypothetical protein VITISV_024677 [Vitis vinifera]
          Length = 695

 Score =  112 bits (279), Expect = 7e-23
 Identities = 57/121 (47%), Positives = 78/121 (64%)
 Frame = +2

Query: 245 QTKIEQGEKVNLGTNIEPKFVYVGADLDPKLKEQLVKFLSLNKDVFIWSYIDMPGIDPQV 424
           Q  +++ +++NLGTN +P+ +YV   L P  ++   + L   KDVF WSY  M G+DP+V
Sbjct: 343 QATVDELKELNLGTNEKPRPIYVSMLLSPFEEKSYFELLLDYKDVFAWSYKKMSGLDPKV 402

Query: 425 ACHKLNVNPNVKPIKQRLHKLALKF*KAINKEIEKLKNVGFIREVKYPTWLANIVAIPKK 604
           A H+L V   V+PIKQ   +  L+    I  +IEKL  VGFIREV YPTW+ANIV + KK
Sbjct: 403 AIHQLMVKHGVRPIKQAQRRFRLELVMQIETKIEKLIEVGFIREVNYPTWIANIVLVKKK 462

Query: 605 N 607
           N
Sbjct: 463 N 463


>emb|CAH67120.1| H0502G05.11 [Oryza sativa Indica Group]
          Length = 2933

 Score =  111 bits (277), Expect = 1e-22
 Identities = 51/121 (42%), Positives = 81/121 (66%)
 Frame = +2

Query: 245  QTKIEQGEKVNLGTNIEPKFVYVGADLDPKLKEQLVKFLSLNKDVFIWSYIDMPGIDPQV 424
            Q  I++  ++NLGT  +P+ ++V A L  + +E    FL   +D F W+Y +MPG+DP+V
Sbjct: 1837 QPTIDELVEMNLGTEDDPRPIFVSAMLTEEEREDYRSFLMEYRDCFTWTYKEMPGLDPRV 1896

Query: 425  ACHKLNVNPNVKPIKQRLHKLALKF*KAINKEIEKLKNVGFIREVKYPTWLANIVAIPKK 604
            A HKL ++P  +P+KQ   +L  +F   +  E+++L NVGFI+E++YP WLANI+ + KK
Sbjct: 1897 ATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQYPRWLANIIPVEKK 1956

Query: 605  N 607
            N
Sbjct: 1957 N 1957