BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026454
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   124   8e-27
gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...   119   3e-25
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...   115   5e-24
ref|XP_002457671.1| hypothetical protein SORBIDRAFT_03g011415 [S...   113   1e-23
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   110   2e-22

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  124 bits (311), Expect = 8e-27
 Identities = 61/168 (36%), Positives = 94/168 (55%)
 Frame = -3

Query: 506 PTESSIQKEQELLIQYDHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANIS 327
           P+E +I   + L  + D L + +E++WHQ+SRQDW K G+ NTK+FH     R  R N+ 
Sbjct: 319 PSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVR 378

Query: 326 QIKDSNGTTHQQREDIGNCFVNYFSDLFSSTVDDLPGSYFDVIPQLVSDEDNDCLLRPVQ 147
           +I++  G   +  +D+  CF +YF +LF S  +       +++   ++DE    L  P +
Sbjct: 379 RIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVKPQITDELGTQLDAPFR 438

Query: 146 DSEVFEALNHMGSLKAPGPDGFQALFFKNYWNEVGPKVLDLVQNFFNN 3
             EV  AL  M   KAPGPDG  ALF++++W+ +G  V   V N  NN
Sbjct: 439 REEVSAALAQMHPNKAPGPDGMNALFYQHFWDTIGEDVTTKVLNMLNN 486


>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score =  119 bits (297), Expect = 3e-25
 Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
 Frame = -3

Query: 503 TESSIQKEQELLIQYDHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQ 324
           T+  + KE  L+ +++ +L+ +E+ W QKSR+ W  LG+ NTKYFHT  I RR R  I  
Sbjct: 284 TDDLLNKEDVLIKEFEVVLEQEEIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEM 343

Query: 323 IKDSNGTTHQQREDIGNCFVNYFSDLFS-----STVDDLPGSYFDVIPQLVSDEDNDCLL 159
           +KD  G   ++ E++    V Y+  L+S     S V+ LP + F  + +    E+   L 
Sbjct: 344 LKDDEGKWVEEPEELAKMAVEYYQKLYSVEDVDSIVERLPSAGFTCLTR----EEISDLS 399

Query: 158 RPVQDSEVFEALNHMGSLKAPGPDGFQALFFKNYWNEVGPKVLDLVQNFF 9
           +P    +V  ++  MG  KAPGPDG+Q +F+++ W  VG  V + V NFF
Sbjct: 400 KPFMSIDVENSMRGMGRFKAPGPDGYQPVFYQDCWEVVGQSVTNFVLNFF 449


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score =  115 bits (287), Expect = 5e-24
 Identities = 63/173 (36%), Positives = 98/173 (56%)
 Frame = -3

Query: 521 AMCIMPTESSIQKEQELLIQYDHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRH 342
           ++ I P+    + E +LL++ + L + + + W QK+  D  KLG+MNTKYFHTL   R  
Sbjct: 310 SLSIHPSVFLSKLEIDLLVELNELSKQERVFWAQKAGIDRAKLGDMNTKYFHTLAKIRTC 369

Query: 341 RANISQIKDSNGTTHQQREDIGNCFVNYFSDLFSSTVDDLPGSYFDVIPQLVSDEDNDCL 162
           +  IS +K+ N       ED+    +++F  +F++++     +        +SDE N  L
Sbjct: 370 KRKISCLKNDNHDWVSNNEDLKKMMMSHFEKIFTTSMYSHQRNNSFRGECRISDEWNKRL 429

Query: 161 LRPVQDSEVFEALNHMGSLKAPGPDGFQALFFKNYWNEVGPKVLDLVQNFFNN 3
            R V++ E+ EAL  M  LK+PGPDG QA FFK YW ++GP V+ L+   F N
Sbjct: 430 ARRVEEDEIKEALAQMAPLKSPGPDGIQAFFFKKYWEQMGPSVVSLIIRAFEN 482


>ref|XP_002457671.1| hypothetical protein SORBIDRAFT_03g011415 [Sorghum bicolor]
           gi|241929646|gb|EES02791.1| hypothetical protein
           SORBIDRAFT_03g011415 [Sorghum bicolor]
          Length = 335

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/161 (32%), Positives = 92/161 (57%)
 Frame = -3

Query: 503 TESSIQKEQELLIQYDHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQ 324
           TE++ + ++E++++ + +L+ +E+HW Q+SR +W + G+ NT +FH    KRR +  I  
Sbjct: 39  TEANTESQKEIMVRLELMLEQEEIHWFQRSRANWLRQGDRNTSFFHNFATKRRKKNTIKG 98

Query: 323 IKDSNGTTHQQREDIGNCFVNYFSDLFSSTVDDLPGSYFDVIPQLVSDEDNDCLLRPVQD 144
           + D NG   +    + N   NYF ++F+S V D   S    + + V+ + N  L+     
Sbjct: 99  LMDENGQRQENEIAMRNIIQNYFENIFTSEVGDPDPSVLADVSRSVTPDMNSVLMDTFTA 158

Query: 143 SEVFEALNHMGSLKAPGPDGFQALFFKNYWNEVGPKVLDLV 21
            EV +AL  +G  KA GPDG  A+F+K +W  VG  +++ +
Sbjct: 159 EEVKKALFQIGDFKALGPDGMHAVFYKRFWEIVGDDLVNKI 199


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score =  110 bits (274), Expect = 2e-22
 Identities = 58/158 (36%), Positives = 83/158 (52%)
 Frame = -3

Query: 482 EQELLIQYDHLLQLQEMHWHQKSRQDWWKLGEMNTKYFHTLVIKRRHRANISQIKDSNGT 303
           E+EL  +Y+H+L  +EM W+QKSR+ W KLG+ NT +FH   + RR    I +++  NG 
Sbjct: 321 EKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGI 380

Query: 302 THQQREDIGNCFVNYFSDLFSSTVDDLPGSYFDVIPQLVSDEDNDCLLRPVQDSEVFEAL 123
           +      +    + YF   F  +       + +     + D     L  P+   EVF AL
Sbjct: 381 STSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAAL 440

Query: 122 NHMGSLKAPGPDGFQALFFKNYWNEVGPKVLDLVQNFF 9
           N M   KAPGPDGF  +FFK YW+ VG  V  LV++ F
Sbjct: 441 NSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAF 478