BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026445
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|2...   130   1e-28
ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat...   127   9e-28
ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat...   127   9e-28
ref|XP_002515231.1| pentatricopeptide repeat-containing protein,...   122   2e-26
ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat...   122   3e-26

>ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|222852942|gb|EEE90489.1|
           predicted protein [Populus trichocarpa]
          Length = 507

 Score =  130 bits (326), Expect = 1e-28
 Identities = 70/123 (56%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
 Frame = +1

Query: 4   LLKSYFVQSPKICNPQTFNSITHFFSTLDTPKNEEEKDIET--IFHIVNSSESTQNLKDS 177
           L KS +V S KI           F S    P+N   KDI+   I++I+++S S+QNLK S
Sbjct: 13  LQKSRYVSSSKI----------PFLSLHTNPQNHNNKDIQVDAIYNIISNSTSSQNLKQS 62

Query: 178 LKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGRN 357
           LKST ++LSN LID VLKRVRFSH NPLQALDFFN+TA +  F+H+SYS DT+LYILGR+
Sbjct: 63  LKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLYILGRS 122

Query: 358 RKF 366
           RKF
Sbjct: 123 RKF 125


>ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/124 (54%), Positives = 92/124 (74%), Gaps = 2/124 (1%)
 Frame = +1

Query: 1   ILLKSYFVQSP-KICNPQTFNSI-THFFSTLDTPKNEEEKDIETIFHIVNSSESTQNLKD 174
           IL +  F QSP +  +P   +   +H FS+  T      ++IET+F I+ +S S+ ++K 
Sbjct: 2   ILRRPNFFQSPLRYFSPIPLSIFYSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMKH 60

Query: 175 SLKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGR 354
           SL+S++++LSN LIDGVLKRVRFSH NPLQAL+FFNYTAK+  F+HTS+S DT+LYILGR
Sbjct: 61  SLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGR 120

Query: 355 NRKF 366
           +RKF
Sbjct: 121 SRKF 124


>ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/124 (54%), Positives = 92/124 (74%), Gaps = 2/124 (1%)
 Frame = +1

Query: 1   ILLKSYFVQSP-KICNPQTFNSI-THFFSTLDTPKNEEEKDIETIFHIVNSSESTQNLKD 174
           IL +  F QSP +  +P   +   +H FS+  T      ++IET+F I+ +S S+ ++K 
Sbjct: 2   ILRRPNFFQSPLRYFSPIPLSIFFSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMKH 60

Query: 175 SLKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGR 354
           SL+S++++LSN LIDGVLKRVRFSH NPLQAL+FFNYTAK+  F+HTS+S DT+LYILGR
Sbjct: 61  SLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGR 120

Query: 355 NRKF 366
           +RKF
Sbjct: 121 SRKF 124


>ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545711|gb|EEF47215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score =  122 bits (307), Expect = 2e-26
 Identities = 62/98 (63%), Positives = 73/98 (74%)
 Frame = +1

Query: 73  FFSTLDTPKNEEEKDIETIFHIVNSSESTQNLKDSLKSTQIYLSNSLIDGVLKRVRFSHA 252
           FFST  T  N+   D+E ++ I+ SS S QNLK SL ST I+LSN LID VLKRVRFSH 
Sbjct: 27  FFSTNPTSLND---DVEVVYRIITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHG 83

Query: 253 NPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGRNRKF 366
           NPLQAL+FF YT  +  F+HT YS DT+LYILGR+RKF
Sbjct: 84  NPLQALEFFYYTDNRKGFYHTPYSLDTILYILGRSRKF 121


>ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/110 (55%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
 Frame = +1

Query: 43  NPQTFNSITH--FFSTLDTPKNEEEKDIETIFHIVNSSESTQNLKDSLKSTQIYLSNSLI 216
           NPQ  +S+    ++S        +  D+ET+F IV+S+ ST+NLK SLKS+ ++LSN LI
Sbjct: 33  NPQNPSSVFSRLYWSETIAETTVDNGDVETVFRIVSSASSTRNLKQSLKSSGVFLSNDLI 92

Query: 217 DGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGRNRKF 366
           D VLKRVRFSH NP QAL FFNYT K+  F+HT +S DT+LYILGR+R+F
Sbjct: 93  DKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRF 142