BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026435
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   152   3e-35
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   152   3e-35
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...   128   4e-28
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...   123   1e-26
ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  152 bits (384), Expect = 3e-35
 Identities = 76/124 (61%), Positives = 101/124 (81%)
 Frame = -1

Query: 372 NLSSLPEELHKLQTNPSSSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLS 193
           + SS+P+       + + S+ LP+ Q S DAD IS +L+QHHNPFH MESSLQLNGI LS
Sbjct: 28  HFSSIPQP-----PDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALS 82

Query: 192 SNLVHQSLLRLKHVSKIALAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLI 13
           ++LVHQ+LLRL++VSKIAL+FF+WAK++  + ++HD++SYNL+IDIL KVRQFDVAWQ I
Sbjct: 83  THLVHQTLLRLRNVSKIALSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFI 140

Query: 12  IEMN 1
           IEM+
Sbjct: 141 IEMD 144


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  152 bits (384), Expect = 3e-35
 Identities = 76/124 (61%), Positives = 101/124 (81%)
 Frame = -1

Query: 372 NLSSLPEELHKLQTNPSSSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLS 193
           + SS+P+       + + S+ LP+ Q S DAD IS +L+QHHNPFH MESSLQLNGI LS
Sbjct: 28  HFSSIPQP-----PDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALS 82

Query: 192 SNLVHQSLLRLKHVSKIALAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLI 13
           ++LVHQ+LLRL++VSKIAL+FF+WAK++  + ++HD++SYNL+IDIL KVRQFDVAWQ I
Sbjct: 83  THLVHQTLLRLRNVSKIALSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFI 140

Query: 12  IEMN 1
           IEM+
Sbjct: 141 IEMD 144


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score =  128 bits (322), Expect = 4e-28
 Identities = 64/107 (59%), Positives = 88/107 (82%)
 Frame = -1

Query: 321 SSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKI 142
           S+ +LP+ + SNDA+ +S +L+ HHNPFH MESSLQL+GITLSS+L+HQ+LLRL+H SKI
Sbjct: 26  STFSLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKI 85

Query: 141 ALAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMN 1
           AL+FF ++ +   S  + +  +YNL+IDIL KVRQFDV+WQLII+M+
Sbjct: 86  ALSFFHYSLSLPSS--SVNTTTYNLIIDILSKVRQFDVSWQLIIQMD 130


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  123 bits (309), Expect = 1e-26
 Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 17/127 (13%)
 Frame = -1

Query: 330 NPSSSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHV 151
           +P + + LPT Q SNDAD +S +L+ HHNPFH MESSLQL GI+L+ +L+HQ+LLRL+H 
Sbjct: 41  SPRNDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHN 100

Query: 150 SKIALAFFIWA------KNENP-----------SIYTHDIMSYNLMIDILGKVRQFDVAW 22
           SKIAL+ F  +        +NP              T   ++YNLMIDIL KVRQFDV W
Sbjct: 101 SKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCW 160

Query: 21  QLIIEMN 1
           QLI+EM+
Sbjct: 161 QLIVEMD 167


>ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
           gi|449523938|ref|XP_004168980.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  119 bits (298), Expect = 3e-25
 Identities = 62/108 (57%), Positives = 80/108 (74%), Gaps = 2/108 (1%)
 Frame = -1

Query: 318 SSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 139
           SS LP  Q S DAD +S +L+ HHNPFH+MESSLQL+ I+ SS+L+ Q+LLRL H SKIA
Sbjct: 26  SSLLPQIQPSKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIA 85

Query: 138 LAFFIWAKN--ENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMN 1
           L+FF +A +   NP   T    SYN+++DIL KVRQFD AW LI++M+
Sbjct: 86  LSFFDYANSLPSNPISTT----SYNILLDILAKVRQFDAAWHLILQMD 129