BLASTX nr result
ID: Coptis24_contig00026378
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026378
(406 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containi... 135 3e-30
emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera] 135 3e-30
ref|XP_002531694.1| pentatricopeptide repeat-containing protein,... 123 2e-26
ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containi... 118 4e-25
ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
>ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Vitis vinifera]
Length = 822
Score = 135 bits (340), Expect = 3e-30
Identities = 61/95 (64%), Positives = 79/95 (83%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
++ALICALCK ++E+AQ LF++ML K+WN DEIVWTVL+DGLLKEG+ + CMK LHIME
Sbjct: 722 YRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIME 781
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKLK 122
+N++PN QTYVIL REL + KS E++ +ADKLK
Sbjct: 782 SKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 816
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+ L+ K KLE A F+ M+ NP+ + +T LIDG K+G+ + + L ME
Sbjct: 481 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKL 125
+PN ++Y + L KE++ E + + DK+
Sbjct: 541 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/92 (31%), Positives = 51/92 (55%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+ A+I L K ++ +A+ + + M+ + P+ I +T LIDGL + G+++ K H ME
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVAD 131
R PN TY L L +E K+ E + +++
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAERMSE 642
>emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 135 bits (340), Expect = 3e-30
Identities = 61/95 (64%), Positives = 79/95 (83%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
++ALICALCK ++E+AQ LF++ML K+WN DEIVWTVL+DGLLKEG+ + CMK LHIME
Sbjct: 862 YRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIME 921
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKLK 122
+N++PN QTYVIL REL + KS E++ +ADKLK
Sbjct: 922 SKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 956
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+ L+ K KLE A F+ M+ NP+ + +T LIDG K+G+ + + L ME
Sbjct: 523 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERME 582
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKL 125
+PN ++Y + L KE++ E + + DK+
Sbjct: 583 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/98 (30%), Positives = 52/98 (53%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+ A+I L K ++ +A+ + + M + P+ I +T LIDGL + G+++ K H ME
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 652
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKLKA*G 113
R PN TY L L +E K+ E + + +++ G
Sbjct: 653 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 690
>ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528670|gb|EEF30685.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 821
Score = 123 bits (308), Expect = 2e-26
Identities = 56/95 (58%), Positives = 74/95 (77%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+K LICALC VS+ E+A +F+S+L KQWN D IVWTVL+DGLL+EG S+ CMKFL++ME
Sbjct: 721 YKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLME 780
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKLK 122
RN +P+ TY+ILAREL K KS TD + ++L+
Sbjct: 781 SRNCTPSLHTYIILARELSKVGKSIGTDQIGNRLR 815
>ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus]
Length = 830
Score = 118 bits (296), Expect = 4e-25
Identities = 53/94 (56%), Positives = 74/94 (78%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+KALICALCK + +E+AQ +F++ML K WN DE+VWTVL+DGLLKEG+++ C+K LH+ME
Sbjct: 732 YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVME 791
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKL 125
RN + NFQTYV+LAREL D + + ++ +L
Sbjct: 792 SRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825
>ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus]
Length = 830
Score = 117 bits (292), Expect = 1e-24
Identities = 52/94 (55%), Positives = 73/94 (77%)
Frame = -1
Query: 406 FKALICALCKVSKLEDAQTLFESMLSKQWNPDEIVWTVLIDGLLKEGQSEACMKFLHIME 227
+KALICALCK + +E+AQ +F++ML K WN DE+ WTVL+DGLLKEG+++ C+K LH+ME
Sbjct: 732 YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVME 791
Query: 226 LRNYSPNFQTYVILARELPKEDKSFETDWVADKL 125
RN + NFQTYV+LAREL D + + ++ +L
Sbjct: 792 SRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825