BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026319
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32
emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]   142   2e-32
ref|XP_002517972.1| pentatricopeptide repeat-containing protein,...   133   2e-29
ref|XP_002319916.1| predicted protein [Populus trichocarpa] gi|2...   129   3e-28
ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containi...   124   6e-27

>ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/85 (76%), Positives = 73/85 (85%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETKDMYCFGTVLRACAGLAVV 203
           S+ IFDRM  KN VSW ALLG YCQNGDFK+V+ IFR+ME  D+YCFGT+LR CAGLA V
Sbjct: 317 SQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAV 376

Query: 204 RQGKEVHCQYLRKVGWRDIIVESAL 278
           RQGKEVHCQY+RK GWRD+IVESAL
Sbjct: 377 RQGKEVHCQYIRKGGWRDVIVESAL 401



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETK-----DMYCFGTVLRACA 188
           +R +FD + + + + W +++ A  +N  F   L  F  M+       D + FGTVL AC 
Sbjct: 215 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 274

Query: 189 GLAVVRQGKEVHCQYLRKVGWRDIIVESAL 278
            L  ++QGKEVH + +      +++VES+L
Sbjct: 275 NLGRLKQGKEVHAKVITTGFCGNVVVESSL 304


>emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/85 (76%), Positives = 73/85 (85%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETKDMYCFGTVLRACAGLAVV 203
           S+ IFDRM  KN VSW ALLG YCQNGDFK+V+ IFR+ME  D+YCFGT+LR CAGLA V
Sbjct: 376 SQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAV 435

Query: 204 RQGKEVHCQYLRKVGWRDIIVESAL 278
           RQGKEVHCQY+RK GWRD+IVESAL
Sbjct: 436 RQGKEVHCQYIRKGGWRDVIVESAL 460



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETK-----DMYCFGTVLRACA 188
           +R +FD + + + + W +++ A  +N  F   L  F  M+       D + FGTVL AC 
Sbjct: 274 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 333

Query: 189 GLAVVRQGKEVHCQYLRKVGWRDIIVESAL 278
            L  ++QGKEVH + +      +++VES+L
Sbjct: 334 NLGRLKQGKEVHAKVITTGFCGNVVVESSL 363


>ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542954|gb|EEF44490.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 483

 Score =  133 bits (334), Expect = 2e-29
 Identities = 62/86 (72%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREM-ETKDMYCFGTVLRACAGLAV 200
           S+ +FDRM  KN VSW ALLG +CQNGDF++V+ IFREM E  D+Y FGTVLRACAGLA 
Sbjct: 309 SQRVFDRMSVKNSVSWSALLGGFCQNGDFESVIRIFREMGEADDLYSFGTVLRACAGLAA 368

Query: 201 VRQGKEVHCQYLRKVGWRDIIVESAL 278
           VRQGKEVHCQY+R+ GWRD+I+ESAL
Sbjct: 369 VRQGKEVHCQYVRRGGWRDVIIESAL 394



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETK-----DMYCFGTVLRACA 188
           +R +FD + + + + W +++ AY +N  +   L  F  M+ K     D + FGTVL AC 
Sbjct: 207 ARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACG 266

Query: 189 GLAVVRQGKEVHCQYLRKVGWRDIIVESAL 278
            L  ++QGKEVH + +      +++VES+L
Sbjct: 267 NLRRLKQGKEVHAKLITSGFSGNVVVESSL 296


>ref|XP_002319916.1| predicted protein [Populus trichocarpa] gi|222858292|gb|EEE95839.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score =  129 bits (323), Expect = 3e-28
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETKDMYCFGTVLRACAGLAVV 203
           S+ +FDRM  KN+VSW ALLG YCQNGDF++V+ IFRE +  D Y FGTVLRACAGLA V
Sbjct: 318 SQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAV 377

Query: 204 RQGKEVHCQYLRKVGWRDIIVESAL 278
           RQGKEVHCQY+++  WRD++ ESAL
Sbjct: 378 RQGKEVHCQYVKRCCWRDVVTESAL 402


>ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
           gi|449493172|ref|XP_004159212.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  124 bits (312), Expect = 6e-27
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +3

Query: 24  SRAIFDRMQKKNVVSWCALLGAYCQNGDFKAVLDIFREMETKDMYCFGTVLRACAGLAVV 203
           S+ +FDRM  +N VSW ALL  YC NGD++  +++FREM+  D+Y FGTV+RACAGLA V
Sbjct: 318 SQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDLYSFGTVIRACAGLAAV 377

Query: 204 RQGKEVHCQYLRKVGWRDIIVESAL 278
             GKE+HCQY+RK GWRD+IVESAL
Sbjct: 378 TPGKEIHCQYIRKGGWRDVIVESAL 402