BLASTX nr result
ID: Coptis24_contig00026308
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026308 (401 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi... 156 2e-36 emb|CBI26127.3| unnamed protein product [Vitis vinifera] 154 7e-36 ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ... 152 2e-35 ref|XP_002516850.1| pentatricopeptide repeat-containing protein,... 149 2e-34 ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi... 145 3e-33 >ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980, mitochondrial-like [Vitis vinifera] Length = 623 Score = 156 bits (394), Expect = 2e-36 Identities = 69/131 (52%), Positives = 94/131 (71%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NSL+DMYGKCL + A RVFEEM NEVSWC+LLFAY G F+ VF+ MP ++E+ Sbjct: 110 NSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEI 169 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 AWNI+++G+ +CG E+C+ LFKKM+ + PD WT++AL++A EL EP +G +H I Sbjct: 170 AWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFI 229 Query: 38 VRSGWSSAVAV 6 ++SGW AV V Sbjct: 230 IKSGWVKAVEV 240 Score = 84.7 bits (208), Expect = 7e-15 Identities = 43/131 (32%), Positives = 70/131 (53%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NS++ Y K +VFE + +VSW A++ A++K GD VF P + V Sbjct: 242 NSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVV 301 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 +W ++ G++R G E ++ F KM + PD +T+ A++ ACS LA HG+ +H I Sbjct: 302 SWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSI 361 Query: 38 VRSGWSSAVAV 6 + G+ + V V Sbjct: 362 IHYGFHAYVDV 372 Score = 73.2 bits (178), Expect = 2e-11 Identities = 36/97 (37%), Positives = 58/97 (59%) Frame = -1 Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117 + A K G S R+F++MP++ VAWN ++A +S+ G + + LF M+ + PD Sbjct: 12 IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71 Query: 116 WTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6 +T+TA +SAC+ L E G +HA +V SG S++ V Sbjct: 72 FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPV 108 >emb|CBI26127.3| unnamed protein product [Vitis vinifera] Length = 603 Score = 154 bits (389), Expect = 7e-36 Identities = 67/131 (51%), Positives = 93/131 (70%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NSL+DMYGKCL + A RVFEEM NEVSWC+LLFAY G F+ VF+ MP ++E+ Sbjct: 110 NSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEI 169 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 AWNI+++G+ +CG E+C+ LFKKM+ + PD WT++AL++A EL EP +G +H I Sbjct: 170 AWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFI 229 Query: 38 VRSGWSSAVAV 6 ++SGW + V Sbjct: 230 IKSGWDDVMKV 240 Score = 79.0 bits (193), Expect = 4e-13 Identities = 39/114 (34%), Positives = 64/114 (56%) Frame = -1 Query: 347 RVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEM 168 +VFE + +VSW A++ A++K GD VF P + V+W ++ G++R G E Sbjct: 239 KVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQ 298 Query: 167 CMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6 ++ F KM + PD +T+ A++ ACS LA HG+ +H I+ G+ + V V Sbjct: 299 ALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDV 352 Score = 73.2 bits (178), Expect = 2e-11 Identities = 36/97 (37%), Positives = 58/97 (59%) Frame = -1 Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117 + A K G S R+F++MP++ VAWN ++A +S+ G + + LF M+ + PD Sbjct: 12 IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71 Query: 116 WTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6 +T+TA +SAC+ L E G +HA +V SG S++ V Sbjct: 72 FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPV 108 >ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 665 Score = 152 bits (385), Expect = 2e-35 Identities = 64/131 (48%), Positives = 93/131 (70%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 N+L+DMYGKC P+ A +VF+EM NEV+WC+LLFAY F+ +F MP ++E+ Sbjct: 111 NALIDMYGKCFNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEI 170 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 AWNI++A +RCG+ E C++LFK+M + PD WT++ALMSAC+E E HG +H + Sbjct: 171 AWNIIIAAHARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFV 230 Query: 38 VRSGWSSAVAV 6 ++SGWS+A+ V Sbjct: 231 IKSGWSTAMEV 241 Score = 81.3 bits (199), Expect = 8e-14 Identities = 41/124 (33%), Positives = 67/124 (54%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NS+V Y K A +VF N+VSW A++ A++K GD + F P + V Sbjct: 243 NSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIV 302 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 +W ++ G++R G ++ ++LF MK ++ D A++ AC+ LA HG+ VH+CI Sbjct: 303 SWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCI 362 Query: 38 VRSG 27 + G Sbjct: 363 IHLG 366 Score = 57.0 bits (136), Expect = 2e-06 Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Frame = -1 Query: 254 RVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKM-KASTCSPDVWTYTALMSACSEL 78 ++F++MP + VAWN ++ +SR G + +LF M + S PD ++Y+A +++C+ Sbjct: 26 KLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYSAAINSCAGA 85 Query: 77 AEPFHGRAVHACIVRSGWSSAVAV 6 ++ G +H+ +V SG+ S++ V Sbjct: 86 SDIRFGTKLHSLVVVSGYQSSLPV 109 >ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 623 Score = 149 bits (376), Expect = 2e-34 Identities = 66/132 (50%), Positives = 90/132 (68%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NSL+DMYGKC A +VF+EM NEVSWC+LLFAY G F +FN MP + E+ Sbjct: 110 NSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEI 169 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 AWN ++AG R G+ E+C+++F++M+ S PD WTY+AL+SAC+E E G +H + Sbjct: 170 AWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLV 229 Query: 38 VRSGWSSAVAVK 3 +RSGWSSA+ K Sbjct: 230 IRSGWSSAMEAK 241 Score = 86.3 bits (212), Expect = 2e-15 Identities = 44/131 (33%), Positives = 74/131 (56%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NS++ +Y K + A +V E + +VSW A++ AY+K G +F +P + V Sbjct: 242 NSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIV 301 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 +W ++ G++R G E + F M ++ PD +T+ A++ ACS LA HGR VH C Sbjct: 302 SWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCA 361 Query: 38 VRSGWSSAVAV 6 +R+G+S+ + V Sbjct: 362 IRNGFSTYLYV 372 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/83 (31%), Positives = 52/83 (62%) Frame = -1 Query: 254 RVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELA 75 ++F++MPN+ VAWN ++ +S+ G + +++F +M+ + PD +T+TA +SAC+ Sbjct: 26 KLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAG 85 Query: 74 EPFHGRAVHACIVRSGWSSAVAV 6 G +HA ++ G+ S++ V Sbjct: 86 SFPFGTKIHALVIILGYHSSLPV 108 >ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980, mitochondrial-like [Glycine max] Length = 629 Score = 145 bits (367), Expect = 3e-33 Identities = 63/132 (47%), Positives = 90/132 (68%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NSL+DMYGKCLLP A +VF+E NEV+WC+L+FAY +F MP ++ + Sbjct: 112 NSLIDMYGKCLLPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVI 171 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 AWNI++ G +R G+ E C++LFK+M S C PD WT++AL++AC+ E +G VH + Sbjct: 172 AWNIMIVGHARRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFV 231 Query: 38 VRSGWSSAVAVK 3 ++SGWSSA+ VK Sbjct: 232 IKSGWSSAMEVK 243 Score = 82.8 bits (203), Expect = 3e-14 Identities = 41/124 (33%), Positives = 67/124 (54%) Frame = -1 Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219 NS++ Y K A +VF N+VSW A++ A++K GD + F P + V Sbjct: 244 NSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIV 303 Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39 +W ++AG++R G E+ +++F + ++ D A++ AC+ LA HGR VH CI Sbjct: 304 SWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCI 363 Query: 38 VRSG 27 +R G Sbjct: 364 IRHG 367 Score = 57.8 bits (138), Expect = 9e-07 Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Frame = -1 Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117 + A + G ++F+++P++ VAWN ++ +S G + ++LF M+ S PD Sbjct: 12 IVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDN 71 Query: 116 WTYTALMSACSELAEPF--HGRAVHACIVRSGWSSAVAV 6 ++++A+++AC+ + G +HA +V SG+ S++ V Sbjct: 72 FSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPV 110