BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026308
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
emb|CBI26127.3| unnamed protein product [Vitis vinifera]              154   7e-36
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ...   152   2e-35
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...   149   2e-34
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33

>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  156 bits (394), Expect = 2e-36
 Identities = 69/131 (52%), Positives = 94/131 (71%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NSL+DMYGKCL  + A RVFEEM   NEVSWC+LLFAY   G F+    VF+ MP ++E+
Sbjct: 110 NSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEI 169

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           AWNI+++G+ +CG  E+C+ LFKKM+  +  PD WT++AL++A  EL EP +G  +H  I
Sbjct: 170 AWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFI 229

Query: 38  VRSGWSSAVAV 6
           ++SGW  AV V
Sbjct: 230 IKSGWVKAVEV 240



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 43/131 (32%), Positives = 70/131 (53%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NS++  Y K        +VFE +    +VSW A++ A++K GD      VF   P +  V
Sbjct: 242 NSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVV 301

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           +W  ++ G++R G  E  ++ F KM  +   PD +T+ A++ ACS LA   HG+ +H  I
Sbjct: 302 SWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSI 361

Query: 38  VRSGWSSAVAV 6
           +  G+ + V V
Sbjct: 362 IHYGFHAYVDV 372



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/97 (37%), Positives = 58/97 (59%)
 Frame = -1

Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117
           + A  K G   S  R+F++MP++  VAWN ++A +S+ G  +  + LF  M+ +   PD 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 116 WTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6
           +T+TA +SAC+ L E   G  +HA +V SG  S++ V
Sbjct: 72  FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPV 108


>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  154 bits (389), Expect = 7e-36
 Identities = 67/131 (51%), Positives = 93/131 (70%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NSL+DMYGKCL  + A RVFEEM   NEVSWC+LLFAY   G F+    VF+ MP ++E+
Sbjct: 110 NSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEI 169

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           AWNI+++G+ +CG  E+C+ LFKKM+  +  PD WT++AL++A  EL EP +G  +H  I
Sbjct: 170 AWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFI 229

Query: 38  VRSGWSSAVAV 6
           ++SGW   + V
Sbjct: 230 IKSGWDDVMKV 240



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 39/114 (34%), Positives = 64/114 (56%)
 Frame = -1

Query: 347 RVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEM 168
           +VFE +    +VSW A++ A++K GD      VF   P +  V+W  ++ G++R G  E 
Sbjct: 239 KVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQ 298

Query: 167 CMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6
            ++ F KM  +   PD +T+ A++ ACS LA   HG+ +H  I+  G+ + V V
Sbjct: 299 ALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDV 352



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/97 (37%), Positives = 58/97 (59%)
 Frame = -1

Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117
           + A  K G   S  R+F++MP++  VAWN ++A +S+ G  +  + LF  M+ +   PD 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 116 WTYTALMSACSELAEPFHGRAVHACIVRSGWSSAVAV 6
           +T+TA +SAC+ L E   G  +HA +V SG  S++ V
Sbjct: 72  FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPV 108


>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510628|gb|AES91770.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  152 bits (385), Expect = 2e-35
 Identities = 64/131 (48%), Positives = 93/131 (70%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           N+L+DMYGKC  P+ A +VF+EM   NEV+WC+LLFAY     F+    +F  MP ++E+
Sbjct: 111 NALIDMYGKCFNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEI 170

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           AWNI++A  +RCG+ E C++LFK+M  +   PD WT++ALMSAC+E  E  HG  +H  +
Sbjct: 171 AWNIIIAAHARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFV 230

Query: 38  VRSGWSSAVAV 6
           ++SGWS+A+ V
Sbjct: 231 IKSGWSTAMEV 241



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 41/124 (33%), Positives = 67/124 (54%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NS+V  Y K      A +VF      N+VSW A++ A++K GD +     F   P +  V
Sbjct: 243 NSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIV 302

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           +W  ++ G++R G  ++ ++LF  MK ++   D     A++ AC+ LA   HG+ VH+CI
Sbjct: 303 SWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCI 362

Query: 38  VRSG 27
           +  G
Sbjct: 363 IHLG 366



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = -1

Query: 254 RVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKM-KASTCSPDVWTYTALMSACSEL 78
           ++F++MP +  VAWN ++  +SR G  +   +LF  M + S   PD ++Y+A +++C+  
Sbjct: 26  KLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYSAAINSCAGA 85

Query: 77  AEPFHGRAVHACIVRSGWSSAVAV 6
           ++   G  +H+ +V SG+ S++ V
Sbjct: 86  SDIRFGTKLHSLVVVSGYQSSLPV 109


>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  149 bits (376), Expect = 2e-34
 Identities = 66/132 (50%), Positives = 90/132 (68%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NSL+DMYGKC     A +VF+EM   NEVSWC+LLFAY   G F     +FN MP + E+
Sbjct: 110 NSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEI 169

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           AWN ++AG  R G+ E+C+++F++M+ S   PD WTY+AL+SAC+E  E   G  +H  +
Sbjct: 170 AWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLV 229

Query: 38  VRSGWSSAVAVK 3
           +RSGWSSA+  K
Sbjct: 230 IRSGWSSAMEAK 241



 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/131 (33%), Positives = 74/131 (56%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NS++ +Y K    + A +V E   +  +VSW A++ AY+K G       +F  +P +  V
Sbjct: 242 NSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIV 301

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           +W  ++ G++R G  E  +  F  M ++   PD +T+ A++ ACS LA   HGR VH C 
Sbjct: 302 SWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCA 361

Query: 38  VRSGWSSAVAV 6
           +R+G+S+ + V
Sbjct: 362 IRNGFSTYLYV 372



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 52/83 (62%)
 Frame = -1

Query: 254 RVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELA 75
           ++F++MPN+  VAWN ++  +S+ G  +  +++F +M+ +   PD +T+TA +SAC+   
Sbjct: 26  KLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAG 85

Query: 74  EPFHGRAVHACIVRSGWSSAVAV 6
               G  +HA ++  G+ S++ V
Sbjct: 86  SFPFGTKIHALVIILGYHSSLPV 108


>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  145 bits (367), Expect = 3e-33
 Identities = 63/132 (47%), Positives = 90/132 (68%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NSL+DMYGKCLLP  A +VF+E    NEV+WC+L+FAY           +F  MP ++ +
Sbjct: 112 NSLIDMYGKCLLPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVI 171

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           AWNI++ G +R G+ E C++LFK+M  S C PD WT++AL++AC+   E  +G  VH  +
Sbjct: 172 AWNIMIVGHARRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFV 231

Query: 38  VRSGWSSAVAVK 3
           ++SGWSSA+ VK
Sbjct: 232 IKSGWSSAMEVK 243



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 41/124 (33%), Positives = 67/124 (54%)
 Frame = -1

Query: 398 NSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAYVKFGDFESGCRVFNDMPNQIEV 219
           NS++  Y K      A +VF      N+VSW A++ A++K GD +     F   P +  V
Sbjct: 244 NSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIV 303

Query: 218 AWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDVWTYTALMSACSELAEPFHGRAVHACI 39
           +W  ++AG++R G  E+ +++F  +  ++   D     A++ AC+ LA   HGR VH CI
Sbjct: 304 SWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCI 363

Query: 38  VRSG 27
           +R G
Sbjct: 364 IRHG 367



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
 Frame = -1

Query: 296 LFAYVKFGDFESGCRVFNDMPNQIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 117
           + A  + G      ++F+++P++  VAWN ++  +S  G  +  ++LF  M+ S   PD 
Sbjct: 12  IVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDN 71

Query: 116 WTYTALMSACSELAEPF--HGRAVHACIVRSGWSSAVAV 6
           ++++A+++AC+     +   G  +HA +V SG+ S++ V
Sbjct: 72  FSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPV 110