BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026304
         (1417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...   555   e-156
emb|CBI31981.3| unnamed protein product [Vitis vinifera]              511   e-142
ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containi...   486   e-135
ref|XP_003593920.1| Pentatricopeptide repeat-containing protein ...   481   e-133
ref|XP_002890625.1| pentatricopeptide repeat-containing protein ...   463   e-128

>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
            mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  555 bits (1431), Expect = e-156
 Identities = 279/471 (59%), Positives = 348/471 (73%)
 Frame = -2

Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237
            DY A IF++I +PNLFMFNTMLRGYS S  PKQA ++F  LRAQ ++LDQF+FI TLKAC
Sbjct: 78   DYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKAC 137

Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057
            AR++A  TG  IH VV++SG   + +V+N+LL FY  C RIGDAH+LFD  P + DLVSW
Sbjct: 138  ARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSW 197

Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877
            NTL+G Y+++  P  VT LF EM   G           L A GDL N+ GG ++H +CIK
Sbjct: 198  NTLLGGYLQVPHPTMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIK 257

Query: 876  RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697
              FCS+LNV TA++ MY+  G +    KIF  V KKD+VLWNC+I+GYA +         
Sbjct: 258  VGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSL 317

Query: 696  XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSK 517
                  E+VKPNS+TL G+LS CA++GA +VG+ I  Y+E+  + LD VLGTAL+DMY K
Sbjct: 318  LQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCK 377

Query: 516  CGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAV 337
            CG++EKA D+FE M+ KDV+SWTAMI+G GV+G A  AI +F RM+V G  PNEVTFLAV
Sbjct: 378  CGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAV 437

Query: 336  LNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER 157
            LNACSHGG+V EG  + EKM+R YGFSP + HYGCMIDLLGRAGLLEEA++LIKSLPIE 
Sbjct: 438  LNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEG 497

Query: 156  DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4
            D T WRALLAACRV+G+V+LGE  +R L+E+ DEHPTDSIL+SS+YAI GR
Sbjct: 498  DATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGR 548


>emb|CBI31981.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  511 bits (1316), Expect = e-142
 Identities = 265/471 (56%), Positives = 330/471 (70%)
 Frame = -2

Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237
            DY A IF++I +PNLFMFNTMLRGYS S  PKQA ++F  LRAQ ++LDQF+FI TLKAC
Sbjct: 78   DYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKAC 137

Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057
            AR++A  TG  IH VV++SG   + +V+N+LL FY  C RIGDAH+LFD  P + DLVSW
Sbjct: 138  ARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSW 197

Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877
            NTL+G Y+++  P  VT LF EM                                  C K
Sbjct: 198  NTLLGGYLQVPHPTMVTCLFGEM----------------------------------CRK 223

Query: 876  RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697
                 +LNV TA++ MY+  G +    KIF  V KKD+VLWNC+I+GYA +         
Sbjct: 224  -----DLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSL 278

Query: 696  XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSK 517
                  E+VKPNS+TL G+LS CA++GA +VG+ I  Y+E+  + LD VLGTAL+DMY K
Sbjct: 279  LQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCK 338

Query: 516  CGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAV 337
            CG++EKA D+FE M+ KDV+SWTAMI+G GV+G A  AI +F RM+V G  PNEVTFLAV
Sbjct: 339  CGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAV 398

Query: 336  LNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER 157
            LNACSHGG+V EG  + EKM+R YGFSP + HYGCMIDLLGRAGLLEEA++LIKSLPIE 
Sbjct: 399  LNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEG 458

Query: 156  DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4
            D T WRALLAACRV+G+V+LGE  +R L+E+ DEHPTDSIL+SS+YAI GR
Sbjct: 459  DATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGR 509


>ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
            mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  486 bits (1251), Expect = e-135
 Identities = 247/471 (52%), Positives = 320/471 (67%), Gaps = 1/471 (0%)
 Frame = -2

Query: 1413 YGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKACA 1234
            Y A IF EI NPNLFMFNTMLRGYS S   KQA ++FN LR Q  L D+F+FI TLKACA
Sbjct: 76   YAASIFREIRNPNLFMFNTMLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACA 135

Query: 1233 RKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSWN 1054
            R++A+  G  IH +V KSG   + DV N LL FY +C++I DAH+LFD   +  DLVSWN
Sbjct: 136  RELAIHVGKGIHGIVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWN 195

Query: 1053 TLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIKR 874
            TLM  Y++ SQP+ V + F +M   G            SA GD+ N   G +++ +CIK 
Sbjct: 196  TLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKL 255

Query: 873  RFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXX 694
               S L VVT ++ MY K G +  A  IF+ V +KD+++WNC+I+ YA NG         
Sbjct: 256  GLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASL 315

Query: 693  XXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKC 514
                 E +KPNS+TLAG++S CA+SGA++ G  +  Y +   L LD VLGT L+ MY+K 
Sbjct: 316  HLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKF 375

Query: 513  GYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAVL 334
            G+++KA DIF+ M+ KDV++WTAMITG G +G   + ++   RM+  G  PNE+TFLAVL
Sbjct: 376  GFLDKAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVL 435

Query: 333  NACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER- 157
            NA SHGG+V EG   F++M+  YG +P I HYGC+IDLLGRAGLLEEA+ LIKSLP  + 
Sbjct: 436  NAYSHGGIVAEGMKCFKRMVYEYGITPKIEHYGCIIDLLGRAGLLEEAHKLIKSLPSTKG 495

Query: 156  DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4
            D T WR LLAACRV+G VELGET +R L++LNDEHP DS+L+SS+YAI GR
Sbjct: 496  DITGWRTLLAACRVYGDVELGETVKRKLVDLNDEHPADSMLLSSTYAIAGR 546


>ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355482968|gb|AES64171.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 801

 Score =  481 bits (1239), Expect = e-133
 Identities = 242/472 (51%), Positives = 326/472 (69%), Gaps = 1/472 (0%)
 Frame = -2

Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237
            +Y + IF+ I NPNLFM+NTMLRGYS S    +AL +FN LR  G  LD F+FI  +KAC
Sbjct: 60   NYASTIFTCIQNPNLFMYNTMLRGYSVSNSSNKALPIFNKLRNSGNGLDPFSFIAVMKAC 119

Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057
             R   VG G  +H +V+KSG  +++D+ N++L FY  C RI DA ++FD  PE  DLVSW
Sbjct: 120  GRSFEVGFGRGVHGIVVKSGNRFFVDLNNTILQFYCVCGRIDDARKVFDECPERNDLVSW 179

Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877
            N LMG  + +S    V +LF +   +G           LSA GD+ +   G+++H YCIK
Sbjct: 180  NILMGGCVLVSDYSFVFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGKSLHGYCIK 239

Query: 876  RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697
              FC  LNVVTA++ MY+K GC+  ARK+FDGV++KD+VLWNC+I+ YA +         
Sbjct: 240  IGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVAL 299

Query: 696  XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVR-IHEYIEKASLGLDEVLGTALLDMYS 520
                  E VKPNS+TL G+LS  ++SG++  GVR +   IE+  L LD +LGTAL+D+Y+
Sbjct: 300  LQSMRQEGVKPNSSTLVGLLSVYSASGSMQ-GVRYVTSLIEEEKLELDVILGTALVDVYA 358

Query: 519  KCGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLA 340
            KCG++++A +IFE M+ KDV+SWTA+I+G G++G A  AI LF RM+  G  PNE+TFLA
Sbjct: 359  KCGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEGFRPNEITFLA 418

Query: 339  VLNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIE 160
            +L ACSHGGLV EG  +F++M++ +GFSP + HYGC+IDLLGRAG+L EA++LIKSLPI+
Sbjct: 419  ILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGCLIDLLGRAGMLHEAFELIKSLPIK 478

Query: 159  RDTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4
             D T+WR LL+ACRVHG V+LGE  +  L      HPTDS+LIS +YA  GR
Sbjct: 479  GDATSWRTLLSACRVHGDVKLGECVKDVLSNFYTPHPTDSLLISGTYAAAGR 530


>ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297336467|gb|EFH66884.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 568

 Score =  463 bits (1191), Expect = e-128
 Identities = 229/471 (48%), Positives = 322/471 (68%), Gaps = 2/471 (0%)
 Frame = -2

Query: 1413 YGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKACA 1234
            Y + IF  + N NL+MFNTM+RGYS S +P++A  +FN LRA+GI LD+F+FI TLK+C+
Sbjct: 73   YASSIFEHVSNTNLYMFNTMIRGYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCS 132

Query: 1233 RKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSWN 1054
            R +    G  +H + L+SGF  + D+RN+LL FY  C RI DA ++FD  P   D VS++
Sbjct: 133  RDLCSSIGEGLHGIALRSGFMVFTDLRNALLQFYCVCGRINDARKVFDEMPHSVDSVSFS 192

Query: 1053 TLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIKR 874
            TLM  Y+++S+     +LF  M  +            LSA GDL NL G E+ H  CIK 
Sbjct: 193  TLMNGYLQVSKKALALDLFRIMRNSEVPVNVSTLLSFLSATGDLGNLSGAESAHGLCIKI 252

Query: 873  RFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXX 694
             F  +L+++TA++ MY K G +G+AR+IFD  ++KD+V WNC+I+ YA  G         
Sbjct: 253  GFNLDLHLITALIGMYGKIGDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLL 312

Query: 693  XXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKC 514
                 E++KPNS+T  G+LS+CA+S A  VG  + + +E+  + LD  LGTAL+DMY+K 
Sbjct: 313  RQMKYERMKPNSSTFVGLLSSCANSEAAFVGRSVADLVEEERIALDAKLGTALVDMYAKL 372

Query: 513  GYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMG--VVPNEVTFLA 340
            G ++KA +IF  M+ KDV+SWTAMI+G G +GLA EA+ LF +M+     V PNE+TFL 
Sbjct: 373  GMLDKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLV 432

Query: 339  VLNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIE 160
            VLNACSHGGL+ EG   F++M+  Y F+P + HYGC++DLLGRAG LEEAY+LI++LPI 
Sbjct: 433  VLNACSHGGLIMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPIT 492

Query: 159  RDTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHG 7
             D+TAWRALLAACRV+G+ +LGE+    L E+++ HP D+ILI+ ++A+ G
Sbjct: 493  SDSTAWRALLAACRVYGNADLGESVMMRLAEMDEIHPADAILIAGTHAVAG 543