BLASTX nr result
ID: Coptis24_contig00026304
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026304 (1417 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi... 555 e-156 emb|CBI31981.3| unnamed protein product [Vitis vinifera] 511 e-142 ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containi... 486 e-135 ref|XP_003593920.1| Pentatricopeptide repeat-containing protein ... 481 e-133 ref|XP_002890625.1| pentatricopeptide repeat-containing protein ... 463 e-128 >ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like [Vitis vinifera] Length = 597 Score = 555 bits (1431), Expect = e-156 Identities = 279/471 (59%), Positives = 348/471 (73%) Frame = -2 Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237 DY A IF++I +PNLFMFNTMLRGYS S PKQA ++F LRAQ ++LDQF+FI TLKAC Sbjct: 78 DYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKAC 137 Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057 AR++A TG IH VV++SG + +V+N+LL FY C RIGDAH+LFD P + DLVSW Sbjct: 138 ARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSW 197 Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877 NTL+G Y+++ P VT LF EM G L A GDL N+ GG ++H +CIK Sbjct: 198 NTLLGGYLQVPHPTMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIK 257 Query: 876 RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697 FCS+LNV TA++ MY+ G + KIF V KKD+VLWNC+I+GYA + Sbjct: 258 VGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSL 317 Query: 696 XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSK 517 E+VKPNS+TL G+LS CA++GA +VG+ I Y+E+ + LD VLGTAL+DMY K Sbjct: 318 LQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCK 377 Query: 516 CGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAV 337 CG++EKA D+FE M+ KDV+SWTAMI+G GV+G A AI +F RM+V G PNEVTFLAV Sbjct: 378 CGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAV 437 Query: 336 LNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER 157 LNACSHGG+V EG + EKM+R YGFSP + HYGCMIDLLGRAGLLEEA++LIKSLPIE Sbjct: 438 LNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEG 497 Query: 156 DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4 D T WRALLAACRV+G+V+LGE +R L+E+ DEHPTDSIL+SS+YAI GR Sbjct: 498 DATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGR 548 >emb|CBI31981.3| unnamed protein product [Vitis vinifera] Length = 569 Score = 511 bits (1316), Expect = e-142 Identities = 265/471 (56%), Positives = 330/471 (70%) Frame = -2 Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237 DY A IF++I +PNLFMFNTMLRGYS S PKQA ++F LRAQ ++LDQF+FI TLKAC Sbjct: 78 DYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKAC 137 Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057 AR++A TG IH VV++SG + +V+N+LL FY C RIGDAH+LFD P + DLVSW Sbjct: 138 ARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSW 197 Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877 NTL+G Y+++ P VT LF EM C K Sbjct: 198 NTLLGGYLQVPHPTMVTCLFGEM----------------------------------CRK 223 Query: 876 RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697 +LNV TA++ MY+ G + KIF V KKD+VLWNC+I+GYA + Sbjct: 224 -----DLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSL 278 Query: 696 XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSK 517 E+VKPNS+TL G+LS CA++GA +VG+ I Y+E+ + LD VLGTAL+DMY K Sbjct: 279 LQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCK 338 Query: 516 CGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAV 337 CG++EKA D+FE M+ KDV+SWTAMI+G GV+G A AI +F RM+V G PNEVTFLAV Sbjct: 339 CGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAV 398 Query: 336 LNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER 157 LNACSHGG+V EG + EKM+R YGFSP + HYGCMIDLLGRAGLLEEA++LIKSLPIE Sbjct: 399 LNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEG 458 Query: 156 DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4 D T WRALLAACRV+G+V+LGE +R L+E+ DEHPTDSIL+SS+YAI GR Sbjct: 459 DATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGR 509 >ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like [Cucumis sativus] Length = 591 Score = 486 bits (1251), Expect = e-135 Identities = 247/471 (52%), Positives = 320/471 (67%), Gaps = 1/471 (0%) Frame = -2 Query: 1413 YGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKACA 1234 Y A IF EI NPNLFMFNTMLRGYS S KQA ++FN LR Q L D+F+FI TLKACA Sbjct: 76 YAASIFREIRNPNLFMFNTMLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACA 135 Query: 1233 RKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSWN 1054 R++A+ G IH +V KSG + DV N LL FY +C++I DAH+LFD + DLVSWN Sbjct: 136 RELAIHVGKGIHGIVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWN 195 Query: 1053 TLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIKR 874 TLM Y++ SQP+ V + F +M G SA GD+ N G +++ +CIK Sbjct: 196 TLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKL 255 Query: 873 RFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXX 694 S L VVT ++ MY K G + A IF+ V +KD+++WNC+I+ YA NG Sbjct: 256 GLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASL 315 Query: 693 XXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKC 514 E +KPNS+TLAG++S CA+SGA++ G + Y + L LD VLGT L+ MY+K Sbjct: 316 HLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKF 375 Query: 513 GYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLAVL 334 G+++KA DIF+ M+ KDV++WTAMITG G +G + ++ RM+ G PNE+TFLAVL Sbjct: 376 GFLDKAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVL 435 Query: 333 NACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIER- 157 NA SHGG+V EG F++M+ YG +P I HYGC+IDLLGRAGLLEEA+ LIKSLP + Sbjct: 436 NAYSHGGIVAEGMKCFKRMVYEYGITPKIEHYGCIIDLLGRAGLLEEAHKLIKSLPSTKG 495 Query: 156 DTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4 D T WR LLAACRV+G VELGET +R L++LNDEHP DS+L+SS+YAI GR Sbjct: 496 DITGWRTLLAACRVYGDVELGETVKRKLVDLNDEHPADSMLLSSTYAIAGR 546 >ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 801 Score = 481 bits (1239), Expect = e-133 Identities = 242/472 (51%), Positives = 326/472 (69%), Gaps = 1/472 (0%) Frame = -2 Query: 1416 DYGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKAC 1237 +Y + IF+ I NPNLFM+NTMLRGYS S +AL +FN LR G LD F+FI +KAC Sbjct: 60 NYASTIFTCIQNPNLFMYNTMLRGYSVSNSSNKALPIFNKLRNSGNGLDPFSFIAVMKAC 119 Query: 1236 ARKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSW 1057 R VG G +H +V+KSG +++D+ N++L FY C RI DA ++FD PE DLVSW Sbjct: 120 GRSFEVGFGRGVHGIVVKSGNRFFVDLNNTILQFYCVCGRIDDARKVFDECPERNDLVSW 179 Query: 1056 NTLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIK 877 N LMG + +S V +LF + +G LSA GD+ + G+++H YCIK Sbjct: 180 NILMGGCVLVSDYSFVFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGKSLHGYCIK 239 Query: 876 RRFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXX 697 FC LNVVTA++ MY+K GC+ ARK+FDGV++KD+VLWNC+I+ YA + Sbjct: 240 IGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVAL 299 Query: 696 XXXXXXEKVKPNSATLAGVLSTCASSGALAVGVR-IHEYIEKASLGLDEVLGTALLDMYS 520 E VKPNS+TL G+LS ++SG++ GVR + IE+ L LD +LGTAL+D+Y+ Sbjct: 300 LQSMRQEGVKPNSSTLVGLLSVYSASGSMQ-GVRYVTSLIEEEKLELDVILGTALVDVYA 358 Query: 519 KCGYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMGVVPNEVTFLA 340 KCG++++A +IFE M+ KDV+SWTA+I+G G++G A AI LF RM+ G PNE+TFLA Sbjct: 359 KCGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEGFRPNEITFLA 418 Query: 339 VLNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIE 160 +L ACSHGGLV EG +F++M++ +GFSP + HYGC+IDLLGRAG+L EA++LIKSLPI+ Sbjct: 419 ILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGCLIDLLGRAGMLHEAFELIKSLPIK 478 Query: 159 RDTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHGR 4 D T+WR LL+ACRVHG V+LGE + L HPTDS+LIS +YA GR Sbjct: 479 GDATSWRTLLSACRVHGDVKLGECVKDVLSNFYTPHPTDSLLISGTYAAAGR 530 >ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336467|gb|EFH66884.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 568 Score = 463 bits (1191), Expect = e-128 Identities = 229/471 (48%), Positives = 322/471 (68%), Gaps = 2/471 (0%) Frame = -2 Query: 1413 YGAKIFSEIGNPNLFMFNTMLRGYSTSGKPKQALLLFNTLRAQGILLDQFTFICTLKACA 1234 Y + IF + N NL+MFNTM+RGYS S +P++A +FN LRA+GI LD+F+FI TLK+C+ Sbjct: 73 YASSIFEHVSNTNLYMFNTMIRGYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCS 132 Query: 1233 RKVAVGTGVAIHSVVLKSGFDYYIDVRNSLLSFYSSCQRIGDAHRLFDMFPEERDLVSWN 1054 R + G +H + L+SGF + D+RN+LL FY C RI DA ++FD P D VS++ Sbjct: 133 RDLCSSIGEGLHGIALRSGFMVFTDLRNALLQFYCVCGRINDARKVFDEMPHSVDSVSFS 192 Query: 1053 TLMGAYIKISQPVAVTNLFTEMHINGFDXXXXXXXXXLSACGDLRNLWGGEAVHAYCIKR 874 TLM Y+++S+ +LF M + LSA GDL NL G E+ H CIK Sbjct: 193 TLMNGYLQVSKKALALDLFRIMRNSEVPVNVSTLLSFLSATGDLGNLSGAESAHGLCIKI 252 Query: 873 RFCSELNVVTAIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXX 694 F +L+++TA++ MY K G +G+AR+IFD ++KD+V WNC+I+ YA G Sbjct: 253 GFNLDLHLITALIGMYGKIGDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLL 312 Query: 693 XXXXXEKVKPNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKC 514 E++KPNS+T G+LS+CA+S A VG + + +E+ + LD LGTAL+DMY+K Sbjct: 313 RQMKYERMKPNSSTFVGLLSSCANSEAAFVGRSVADLVEEERIALDAKLGTALVDMYAKL 372 Query: 513 GYVEKAADIFESMQRKDVRSWTAMITGCGVNGLAWEAIQLFERMQVMG--VVPNEVTFLA 340 G ++KA +IF M+ KDV+SWTAMI+G G +GLA EA+ LF +M+ V PNE+TFL Sbjct: 373 GMLDKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLV 432 Query: 339 VLNACSHGGLVREGKLYFEKMIRVYGFSPGIAHYGCMIDLLGRAGLLEEAYDLIKSLPIE 160 VLNACSHGGL+ EG F++M+ Y F+P + HYGC++DLLGRAG LEEAY+LI++LPI Sbjct: 433 VLNACSHGGLIMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPIT 492 Query: 159 RDTTAWRALLAACRVHGHVELGETARRTLMELNDEHPTDSILISSSYAIHG 7 D+TAWRALLAACRV+G+ +LGE+ L E+++ HP D+ILI+ ++A+ G Sbjct: 493 SDSTAWRALLAACRVYGNADLGESVMMRLAEMDEIHPADAILIAGTHAVAG 543