BLASTX nr result

ID: Coptis24_contig00026281 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026281
         (495 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|2...   109   3e-22
dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas]                         108   3e-22
gb|ABM67700.1| polygalacturonase [Citrus sinensis]                    108   3e-22
ref|XP_003597864.1| hypothetical protein MTR_2g103410 [Medicago ...   107   8e-22
ref|XP_003546932.1| PREDICTED: probable polygalacturonase At1g80...   104   9e-21

>ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|222846859|gb|EEE84406.1|
           predicted protein [Populus trichocarpa]
          Length = 447

 Score =  109 bits (272), Expect = 3e-22
 Identities = 54/88 (61%), Positives = 67/88 (76%)
 Frame = -3

Query: 493 TSAVKVEDISFVNITGTSATEEAIRFACSDTYPCEEIYVENIQLSSYLGGYTTSFCWNVK 314
           TSAVKVE+ISF  I GTSATEEAI+FACSD  PC+ +Y+E++QL S  GG T SFCW   
Sbjct: 356 TSAVKVENISFRRIKGTSATEEAIKFACSDDLPCKGLYLEDVQLLSLTGGTTRSFCWQAY 415

Query: 313 GSSWGVVYPPSCLSCSKSFIELKTLPSN 230
           GSS G+V+P  C SCS+ FI+ K +PS+
Sbjct: 416 GSSRGLVHPSPCFSCSEGFIKEK-VPSH 442


>dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas]
          Length = 443

 Score =  108 bits (271), Expect = 3e-22
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = -3

Query: 493 TSAVKVEDISFVNITGTSATEEAIRFACSDTYPCEEIYVENIQLSSYLGGYTTSFCWNVK 314
           TSAVKV +ISFV+I GTSATE AI+FACSD  PCE +Y+E+IQL S+ G  + SFCW   
Sbjct: 352 TSAVKVANISFVHIKGTSATENAIKFACSDYSPCEGLYLEDIQLVSHTGDISKSFCWEAY 411

Query: 313 GSSWGVVYPPSCLSCSKSFIELKTL 239
           GSS   VYPP C S S+SFIE K L
Sbjct: 412 GSSLDPVYPPPCFSSSESFIEQKVL 436


>gb|ABM67700.1| polygalacturonase [Citrus sinensis]
          Length = 445

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/88 (59%), Positives = 66/88 (75%)
 Frame = -3

Query: 493 TSAVKVEDISFVNITGTSATEEAIRFACSDTYPCEEIYVENIQLSSYLGGYTTSFCWNVK 314
           TSAVKVE+I+F++I GTSATEEAI+FACSD  PCE +++E++QL S+ GG   SFCW   
Sbjct: 353 TSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAY 412

Query: 313 GSSWGVVYPPSCLSCSKSFIELKTLPSN 230
           GSS G V PP C +CS+  I+ K  PSN
Sbjct: 413 GSSVGQVEPPPCFACSEGLIQQKA-PSN 439


>ref|XP_003597864.1| hypothetical protein MTR_2g103410 [Medicago truncatula]
           gi|87162606|gb|ABD28401.1| Glycoside hydrolase, family
           28 [Medicago truncatula] gi|355486912|gb|AES68115.1|
           hypothetical protein MTR_2g103410 [Medicago truncatula]
          Length = 451

 Score =  107 bits (268), Expect = 8e-22
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = -3

Query: 493 TSAVKVEDISFVNITGTSATEEAIRFACSDTYPCEEIYVENIQLSSYLGGYTTSFCWNVK 314
           TSAV+V +ISF+NI GTSATEE I+FACSD  PCE +Y+ENI L SY GG T S+CW   
Sbjct: 357 TSAVQVGNISFINIQGTSATEETIKFACSDASPCEGLYLENIFLRSYFGGNTRSYCWQAH 416

Query: 313 GSSWGVVYPPSCLSCSKSFIELKTL 239
           GS+ G VYPP C S S   I    L
Sbjct: 417 GSAQGYVYPPVCFSTSSDLIRQNVL 441


>ref|XP_003546932.1| PREDICTED: probable polygalacturonase At1g80170-like [Glycine max]
          Length = 443

 Score =  104 bits (259), Expect = 9e-21
 Identities = 47/76 (61%), Positives = 62/76 (81%)
 Frame = -3

Query: 493 TSAVKVEDISFVNITGTSATEEAIRFACSDTYPCEEIYVENIQLSSYLGGYTTSFCWNVK 314
           TSAV+VE+ISF++I GTSATEEAI+F+CSD +PCE +Y+ENI L+S  GG T+SFCW   
Sbjct: 349 TSAVRVENISFIDIQGTSATEEAIKFSCSDAFPCEGLYLENIFLASCFGGNTSSFCWQAH 408

Query: 313 GSSWGVVYPPSCLSCS 266
           GS+ G ++P +CLS S
Sbjct: 409 GSARGFLHPSTCLSSS 424


Top