BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026238
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    81   1e-13
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    81   1e-13
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    79   5e-13
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-12
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...    72   8e-11

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 65/174 (37%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
 Frame = -1

Query: 552 FSLRDGKVYKAELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRIIHLPPLTNF 373
           FSL   K +  +LPE S+RR       GWL+ + E  ++ L NPL  S   +HLPPL+ F
Sbjct: 68  FSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSK--VHLPPLSTF 125

Query: 372 PGVVDTIERNEDGVSSRFYMVSVCSRDV-PRSSKFMRDTYIIKVAMSSSLVSEGTIIMAI 196
           P VV    R       R Y +   S DV  RS K MRD++I K  +SSS  + G+  +A+
Sbjct: 126 PNVV----RFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSS-PANGSDFIAV 180

Query: 195 QATNQT--LAFYRIGGDQQVWTPIARAVGHGMLHDLTYYNGKFYAVHNGGCVFV 40
              NQT  LA  R   D   WT +  A  +    D+ ++ G FYAV+  G + V
Sbjct: 181 VILNQTGDLALCRKSDDS--WTFLEDAQSYA--EDVIFHRGLFYAVNKYGSIAV 230


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 65/174 (37%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
 Frame = -1

Query: 552 FSLRDGKVYKAELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRIIHLPPLTNF 373
           FSL   K +  +LPE S+RR       GWL+ + E  ++ L NPL  S   +HLPPL+ F
Sbjct: 68  FSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSK--VHLPPLSTF 125

Query: 372 PGVVDTIERNEDGVSSRFYMVSVCSRDV-PRSSKFMRDTYIIKVAMSSSLVSEGTIIMAI 196
           P VV    R       R Y +   S DV  RS K MRD++I K  +SSS  + G+  +A+
Sbjct: 126 PNVV----RFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSS-PANGSDFIAV 180

Query: 195 QATNQT--LAFYRIGGDQQVWTPIARAVGHGMLHDLTYYNGKFYAVHNGGCVFV 40
              NQT  LA  R   D   WT +  A  +    D+ ++ G FYAV+  G + V
Sbjct: 181 VILNQTGDLALCRKSDDS--WTFLEDAQSYS--EDVIFHRGLFYAVNKYGSIAV 230


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
 Frame = -1

Query: 552 FSLRDGKVYKAELPELSNR-RICGSFPGGWLMTVHENSQVQLFNPLRSSSRIIHLPPLTN 376
           FSL   K +   LPE+S R R CGS   GWLM + +   + L NPL  +   + LPPL++
Sbjct: 71  FSLSTNKFHFLNLPEVSYRKRHCGS-SHGWLMILDDTPTILLINPLTRAK--LSLPPLSS 127

Query: 375 FPGVVDTIERNEDGVSSRFYMVSVCSRDVPRSSKFMRDTYIIKVAMSSS-LVSEGTIIMA 199
           FP V   I  N   +   + + ++    V  S + MRD++I KV +SSS L     +++A
Sbjct: 128 FPNV---ISFNYSDIGREYALRNLLGERVTVSLRQMRDSFIRKVVLSSSPLKDNNFVVIA 184

Query: 198 IQATNQTLAFYRIGGDQQVWTPIARAVGHGMLHDLTYYNGKFYAVHNGGCVFV 40
           I      LA+ R G   + W+ +  A       D+ + NG FYAV+  G + +
Sbjct: 185 ILNQTDDLAYCRNG--DKSWSLVENA--RSFCEDVIFVNGMFYAVNKAGQIVI 233


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 6/180 (3%)
 Frame = -1

Query: 552 FSLRDGKVYKAELPELSNR-RICGSFPGGWLMTVHENSQVQLFNPLRSSSRIIHLPPLTN 376
           F+L   K +   LPE S+R + CGS   GWL+ + ++  + + NPL  + R IHLP +++
Sbjct: 70  FNLSTYKFHSLNLPEASHRKKHCGS-SHGWLIILDDSPSILVINPL--TRRKIHLPAISS 126

Query: 375 FPGVVDTIERNEDGVSSRFYMVSVCSRDVPRSSKFMRDTYIIKVAMSSS-LVSEGT--II 205
           FP VV     N   V   + +V+        S + MRD +I KV MSSS L  +G   + 
Sbjct: 127 FPNVVSFDYAN---VGREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSPLEKKGDFFVA 183

Query: 204 MAIQATNQTLAFYRIGGDQQVWTPIARAVGHGMLHDLTYYNGKFYAVHNGGCVFV--VNG 31
           MAI  +   LA+ + G   + W  +  +       D+ Y+NG FYAV+  G + V  VNG
Sbjct: 184 MAILCSTGDLAYCKNG--DECWNIVENS--RSFSEDVIYFNGLFYAVNKAGQIVVCDVNG 239


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
           gi|223551309|gb|EEF52795.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 406

 Score = 71.6 bits (174), Expect = 8e-11
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 4/175 (2%)
 Frame = -1

Query: 552 FSLRDGKVYKAELPELSNRRICGSFPGGWLMTVHENSQVQLFNPLRSSSRIIHLPPLTNF 373
           ++L DGK Y  ELPE   +R CGS   GWL+ V +   + L NPL  +   I LP L+ F
Sbjct: 68  YNLADGKTYHLELPETIEKRCCGS-SHGWLVMVEDTPSIFLLNPLTKAR--IELPSLSTF 124

Query: 372 PGV-VDTIERNEDGVSSRFYMVSVCSRDVPRSSKFMRDTYIIKVAMSSSLVSEGTIIMAI 196
           P    + +  N   ++  F           ++   +R+TYI K  +S    +    +MAI
Sbjct: 125 PYFPTEVVYENSRNINEYFN---------TKAKLRIRETYIRKAIVSEDPSTGNFAVMAI 175

Query: 195 QAT---NQTLAFYRIGGDQQVWTPIARAVGHGMLHDLTYYNGKFYAVHNGGCVFV 40
             T    + +AF + G     W  I          D+ ++ GKFYAV + G V +
Sbjct: 176 YKTINSTENIAFCKSG--DATWFTIQETSQKIHYQDVMFHRGKFYAVDDKGRVSI 228