BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026228
         (971 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   260   4e-67
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   253   4e-65
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   249   7e-64
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   246   6e-63
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   246   8e-63

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  260 bits (664), Expect = 4e-67
 Identities = 117/278 (42%), Positives = 186/278 (66%), Gaps = 1/278 (0%)
 Frame = +1

Query: 4    KCRNPPITHLSFADDLIAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAA 183
            KC+   +THLSFADDL+   +G + ++  +     +F   SGL+++LEKS ++ AG+ A 
Sbjct: 692  KCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSAT 751

Query: 184  ICTQMESIIQFQKGTLPVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRL 363
               ++     F  G LPV+YLGLPLIT RL  TDC+PL+++VR +I +W  R LSYAGRL
Sbjct: 752  ARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRL 811

Query: 364  QLLKAVLNNMSIYWISSFVLPQQTIDEINQMCRHFLWSGPECTTSHALISWEDLCFPYDE 543
             L+ +VL ++  +W+++F LP++ I E+ +MC  FLWSG E  ++ A ISW  +C P DE
Sbjct: 812  NLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDE 871

Query: 544  GGLGIRNLRTANIAANLKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLK-VPNDCSWVWR 720
            GGLG+R+L+ AN    LK +W +VS  ++LW +W+ ++L+++ +FW++K   +  SW+W+
Sbjct: 872  GGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWK 931

Query: 721  NILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMGILRE 834
             +L+ R+ AK ++  ++G+G+ T FW D W  +G L E
Sbjct: 932  KLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLE 969


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  253 bits (647), Expect = 4e-65
 Identities = 123/304 (40%), Positives = 189/304 (62%), Gaps = 1/304 (0%)
 Frame = +1

Query: 4    KCRNPPITHLSFADDLIAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAA 183
            +CRN  +THL FADD++ F +G   +++       KF + S L+++LEKS +F AG+   
Sbjct: 839  RCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPN 898

Query: 184  ICTQMESIIQFQKGTLPVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRL 363
              T +     F+ GTLPVKYLGLPL+T R+  +D +PL++K+R +I +W  R LS+AGRL
Sbjct: 899  AKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRL 958

Query: 364  QLLKAVLNNMSIYWISSFVLPQQTIDEINQMCRHFLWSGPECTTSHALISWEDLCFPYDE 543
            QL+K+VL++++ +W+S F LP+  + EI +M   FLWSGP+  T  A I+W ++C   +E
Sbjct: 959  QLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEE 1018

Query: 544  GGLGIRNLRTANIAANLKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLKVPNDC-SWVWR 720
            GGLG++ L+ AN  + LK IW ++S + +LW +W+ K+LI+   FW +K      SW+WR
Sbjct: 1019 GGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWR 1078

Query: 721  NILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMGILREYFPISLTYDSTCNLNASVANMI 900
             IL+ R  A+     ++  G  T FW D W P+G L ++     T D     NA+VA ++
Sbjct: 1079 KILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVM 1138

Query: 901  EDGR 912
               R
Sbjct: 1139 NTHR 1142


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  249 bits (636), Expect = 7e-64
 Identities = 118/282 (41%), Positives = 176/282 (62%), Gaps = 1/282 (0%)
 Frame = +1

Query: 82  VRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAAICTQMESIIQFQKGTLPVKYLGLPLI 261
           V  ++  L KF+  SGL  N  KS++F +G+  A   Q+  I+ F++G LP+KYLG+PL+
Sbjct: 5   VGMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLL 64

Query: 262 TTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRLQLLKAVLNNMSIYWISSFVLPQQTID 441
           ++RLKA  C  L+D++ +K++ W  R LSYAGR+QL+ +VL ++ +YW S F+LP Q I 
Sbjct: 65  SSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIK 124

Query: 442 EINQMCRHFLWSGPECTTSHALISWEDLCFPYDEGGLGIRNLRTANIAANLKHIWNLVS- 618
            + Q+ + FLWSG +  T+ A ++W+ +C P  EGGLGI++++  N  A LKHIWNL + 
Sbjct: 125 NVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCND 184

Query: 619 GQSTLWTQWIKKNLIKDRNFWQLKVPNDCSWVWRNILRNRKDAKFIAHHQIGDGRDTKFW 798
              ++W+ WI+ NL++ RNFW +K P +CSW W  IL+ R  A     + IGDG  T  W
Sbjct: 185 SDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLW 244

Query: 799 LDPWHPMGILREYFPISLTYDSTCNLNASVANMIEDGRWNAP 924
            D WHP   L + +     YDS    NA V  +I++  W  P
Sbjct: 245 FDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTP 286


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  246 bits (628), Expect = 6e-63
 Identities = 120/279 (43%), Positives = 172/279 (61%), Gaps = 2/279 (0%)
 Frame = +1

Query: 4   KCRNPPITHLSFADDLIAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAA 183
           KC+N  +THL FADDL+   +G + +V  + + +  F   SGLQ+N+EK+ ++ AG+   
Sbjct: 97  KCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVSDH 156

Query: 184 ICTQMESIIQFQKGTLPVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRL 363
               M S   F  G LPV+YLGLPL+T RL   D  PL +++RN+I  W  R LS+AGRL
Sbjct: 157 NRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRL 216

Query: 364 QLLKAVLNNMSIYWISSFVLPQQTIDEINQMCRHFLWSGPECTTSHALISWEDLCFPYDE 543
            L+ +VL +   +W+S+F LP   + EIN +C  FLWSGPE     A +SW+D+C P  E
Sbjct: 217 NLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQE 276

Query: 544 GGLGIRNLRTANIAANLKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLKVPNDC--SWVW 717
           GGLG+R+L  AN+ + LK IW + S   +LW +W K NL+K  +FW L  PN    SW+W
Sbjct: 277 GGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL-TPNSSLGSWMW 335

Query: 718 RNILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMGILRE 834
           + +L+ R+ AK  +  ++ +G  T FW D W  MG L +
Sbjct: 336 KKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMD 374


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  246 bits (627), Expect = 8e-63
 Identities = 113/276 (40%), Positives = 178/276 (64%), Gaps = 1/276 (0%)
 Frame = +1

Query: 4   KCRNPPITHLSFADDLIAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAA 183
           +C+   +THLSFADDL+   +G + ++  + +    F  CSGL++++EKS +++AG+   
Sbjct: 74  RCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHT 133

Query: 184 ICTQMESIIQFQKGTLPVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRL 363
              ++ +   F  GTLPV+YLGLPL+T +L +TD +PLI+ ++ KI +W  R LSYAGRL
Sbjct: 134 SPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGSWSARFLSYAGRL 193

Query: 364 QLLKAVLNNMSIYWISSFVLPQQTIDEINQMCRHFLWSGPECTTSHALISWEDLCFPYDE 543
            L+ +VL ++  +W+ +F LP++ I EI++MC  +LWSG +  TS A I+W D+C P DE
Sbjct: 194 NLISSVLWSICNFWMGAFRLPRECIREIDKMCSAYLWSGGDLNTSKAKIAWTDVCKPKDE 253

Query: 544 GGLGIRNLRTANIAANLKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLKVPNDC-SWVWR 720
           GGLG+R+L+ AN  + LK IW ++S   +LW +WI   L+K  +FW ++      SW+W+
Sbjct: 254 GGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWK 313

Query: 721 NILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMGIL 828
            +L+ R  A  +   ++ +G  T FW D W  MG L
Sbjct: 314 KVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRL 349