BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026207
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532249.1| pentatricopeptide repeat-containing protein,...    66   3e-09
ref|XP_003522141.1| PREDICTED: putative pentatricopeptide repeat...    64   2e-08
ref|NP_188138.1| pentatricopeptide repeat-containing protein [Ar...    63   3e-08
ref|XP_002885074.1| pentatricopeptide repeat-containing protein ...    63   3e-08
emb|CBI20261.3| unnamed protein product [Vitis vinifera]               62   4e-08

>ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528067|gb|EEF30143.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
 Frame = -3

Query: 230 SYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITNMKTKLNERKHQHGGCE-I 54
           SYTIMIH L++KGR+ +AL  F EM SKGM+ EPRT++L+++M  KL +   + G  + I
Sbjct: 429 SYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRTEMLVSSMNMKLKDNDAEQGEKDAI 488

Query: 53  GEVR--GSAKQRKKNI 12
             V+  GS  +R++ I
Sbjct: 489 NGVKSLGSMHKRRREI 504


>ref|XP_003522141.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 258

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/60 (50%), Positives = 43/60 (71%)
 Frame = -3

Query: 230 SYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITNMKTKLNERKHQHGGCEIG 51
           SYTIMIH   +KGRV++A++  +EM+SKGM+ EPRTD L+++M  +L  R  +H   E G
Sbjct: 195 SYTIMIHENFEKGRVKDAVRYLEEMISKGMVLEPRTDKLVSSMNIRLKGRTKKHEDVEGG 254


>ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g15200 gi|11994509|dbj|BAB02574.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332642110|gb|AEE75631.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = -3

Query: 230 SYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITNMKTK 93
           +YTI IH LH KG++ EAL  F+EMMSKGM+ EPRT++L+   KTK
Sbjct: 458 TYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTK 503


>ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330914|gb|EFH61333.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 517

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = -3

Query: 230 SYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITNMKTK 93
           +YTI IH LH KG++ EAL  F+EMMSKGM+ EPRT++L+   KTK
Sbjct: 452 TYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTK 497


>emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
 Frame = -3

Query: 230 SYTIMIHRLHKKGRVEEALKCFKEMMSKGMIQEPRTDLLITNMKTKLNERKHQHGG---- 63
           +YTIMIH L+ KGR+++AL  FK+M   GM+ EPRT LL+  M  KL ER+ +  G    
Sbjct: 431 TYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGKGAR 490

Query: 62  CEIGEVRGSAKQRKKNIA 9
            +   +R S ++ KK  A
Sbjct: 491 NKADSIRPSTRRGKKKRA 508