BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026184
         (1066 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding prote...   133   9e-29
emb|CBI21312.3| unnamed protein product [Vitis vinifera]              133   9e-29
emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]   133   9e-29
ref|XP_002328932.1| predicted protein [Populus trichocarpa] gi|2...    97   5e-18
ref|XP_002512890.1| double-stranded RNA binding protein, putativ...    86   2e-14

>ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
          Length = 484

 Score =  133 bits (334), Expect = 9e-29
 Identities = 116/344 (33%), Positives = 157/344 (45%), Gaps = 38/344 (11%)
 Frame = -2

Query: 1065 AAMAAWSALKQMSIVGXXXXXXXXXXXXXXXEHLVVARVLSKFSAKRENRTLRHRNQSQV 886
            AA+AAWSALK++  +G                 +VVARVLS F +K E+R +R  +Q+Q 
Sbjct: 148  AAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFRSKDESRPIRRWDQNQA 205

Query: 885  RKRLILDH----------RVLQHQQWRTMGLXXXXXXXXSIQQR----TALLPRAXXXXX 748
            R+R++  H             Q Q+WR M L           Q      ALLP       
Sbjct: 206  RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 265

Query: 747  XXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSLAMKQDIAPPLEEHQKDEDEWLCKKAII 568
                      ++   SL    + IPVQ    S     ++   LEEHQ+DE+EWL  K+ +
Sbjct: 266  SKILPPISPRDT--LSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWLDGKSNL 323

Query: 567  TEKPTGKD-PNNANPNSVFRQQPKYLSPF--------NSSFLD-----HTQQNIHPRPYR 430
              KPT K+ P+NAN +SV+     Y  PF        N+S  D     H Q +I   P+ 
Sbjct: 324  IRKPTEKECPSNANASSVYGANSIY-RPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFG 382

Query: 429  PATSMGIRTNGSNATTSQRMLNSGGFHVHNIAPAVHIRSVIPVCAT--PPMRPPSSNSPI 256
              T   ++  GS      R + +GGF  H IAPAV IRSVIPVCA   PPMR P SN P 
Sbjct: 383  NPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPPPPMRLPPSNHPT 440

Query: 255  APQ------KKQDLIPSVSDTVLKQAEQEVPTA--SSKLNSLHL 148
              +           IP+ +   LK  + E+ +   SS+ N L L
Sbjct: 441  RNEASPSALSASSSIPAHTGAGLKFNKPELYSTQLSSEFNKLQL 484


>emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  133 bits (334), Expect = 9e-29
 Identities = 116/344 (33%), Positives = 157/344 (45%), Gaps = 38/344 (11%)
 Frame = -2

Query: 1065 AAMAAWSALKQMSIVGXXXXXXXXXXXXXXXEHLVVARVLSKFSAKRENRTLRHRNQSQV 886
            AA+AAWSALK++  +G                 +VVARVLS F +K E+R +R  +Q+Q 
Sbjct: 145  AAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFRSKDESRPIRRWDQNQA 202

Query: 885  RKRLILDH----------RVLQHQQWRTMGLXXXXXXXXSIQQR----TALLPRAXXXXX 748
            R+R++  H             Q Q+WR M L           Q      ALLP       
Sbjct: 203  RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 262

Query: 747  XXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSLAMKQDIAPPLEEHQKDEDEWLCKKAII 568
                      ++   SL    + IPVQ    S     ++   LEEHQ+DE+EWL  K+ +
Sbjct: 263  SKILPPISPRDT--LSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWLDGKSNL 320

Query: 567  TEKPTGKD-PNNANPNSVFRQQPKYLSPF--------NSSFLD-----HTQQNIHPRPYR 430
              KPT K+ P+NAN +SV+     Y  PF        N+S  D     H Q +I   P+ 
Sbjct: 321  IRKPTEKECPSNANASSVYGANSIY-RPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFG 379

Query: 429  PATSMGIRTNGSNATTSQRMLNSGGFHVHNIAPAVHIRSVIPVCAT--PPMRPPSSNSPI 256
              T   ++  GS      R + +GGF  H IAPAV IRSVIPVCA   PPMR P SN P 
Sbjct: 380  NPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPPPPMRLPPSNHPT 437

Query: 255  APQ------KKQDLIPSVSDTVLKQAEQEVPTA--SSKLNSLHL 148
              +           IP+ +   LK  + E+ +   SS+ N L L
Sbjct: 438  RNEASPSALSASSSIPAHTGAGLKFNKPELYSTQLSSEFNKLQL 481


>emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score =  133 bits (334), Expect = 9e-29
 Identities = 116/344 (33%), Positives = 157/344 (45%), Gaps = 38/344 (11%)
 Frame = -2

Query: 1065 AAMAAWSALKQMSIVGXXXXXXXXXXXXXXXEHLVVARVLSKFSAKRENRTLRHRNQSQV 886
            AA+AAWSALK++  +G                 +VVARVLS F +K E+R +R  +Q+Q 
Sbjct: 216  AAIAAWSALKRVPNLGSLSHLSKEAESREE--QVVVARVLSNFRSKDESRPIRRWDQNQA 273

Query: 885  RKRLILDH----------RVLQHQQWRTMGLXXXXXXXXSIQQR----TALLPRAXXXXX 748
            R+R++  H             Q Q+WR M L           Q      ALLP       
Sbjct: 274  RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 333

Query: 747  XXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSLAMKQDIAPPLEEHQKDEDEWLCKKAII 568
                      ++   SL    + IPVQ    S     ++   LEEHQ+DE+EWL  K+ +
Sbjct: 334  SKILPPISPRDT--LSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWLDGKSNL 391

Query: 567  TEKPTGKD-PNNANPNSVFRQQPKYLSPF--------NSSFLD-----HTQQNIHPRPYR 430
              KPT K+ P+NAN +SV+     Y  PF        N+S  D     H Q +I   P+ 
Sbjct: 392  IRKPTEKECPSNANASSVYGANSIY-RPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFG 450

Query: 429  PATSMGIRTNGSNATTSQRMLNSGGFHVHNIAPAVHIRSVIPVCAT--PPMRPPSSNSPI 256
              T   ++  GS      R + +GGF  H IAPAV IRSVIPVCA   PPMR P SN P 
Sbjct: 451  NPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPPPPMRLPPSNHPT 508

Query: 255  APQ------KKQDLIPSVSDTVLKQAEQEVPTA--SSKLNSLHL 148
              +           IP+ +   LK  + E+ +   SS+ N L L
Sbjct: 509  RNEASPSALSASSSIPAHTGAGLKFNKPELYSTQLSSEFNKLQL 552


>ref|XP_002328932.1| predicted protein [Populus trichocarpa] gi|222839362|gb|EEE77699.1|
           predicted protein [Populus trichocarpa]
          Length = 234

 Score = 97.4 bits (241), Expect = 5e-18
 Identities = 67/162 (41%), Positives = 89/162 (54%), Gaps = 20/162 (12%)
 Frame = -2

Query: 687 NKGIPVQVKSNSLAMKQDIAPPLEEHQKDEDEWLCKKAIITEKPTGKD-PNNANPNSVFR 511
           N+ IP+QVK  S     +I   LEEH KDE+EWL  K+ + +KP  K+  +N+NP+S++ 
Sbjct: 31  NRPIPLQVKGKSQVQAPEIPVALEEHLKDEEEWLGTKSDVIKKPIEKEGTSNSNPSSLYA 90

Query: 510 QQPKYLS-PFNS------SFLDHTQQNIH----------PRPYRPATSMGIRTNGSNATT 382
               Y   PF++      S LD+T Q+            P P  P  S  I T  +  T 
Sbjct: 91  SSSIYRPFPFSNTGKPVTSLLDNTSQHESTHISSRIFGSPNP-SPMASTSIHTPSN--TH 147

Query: 381 SQRMLNSGGFHVHNIAPAVHIRSVIPVCATP--PMRPPSSNS 262
             R + +GGF+ H IAPAV IRSVIPVCA P  P+RPP S S
Sbjct: 148 IPRPMFTGGFNPHRIAPAVQIRSVIPVCAAPPSPIRPPQSPS 189


>ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
            gi|223547901|gb|EEF49393.1| double-stranded RNA binding
            protein, putative [Ricinus communis]
          Length = 477

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 89/295 (30%), Positives = 132/295 (44%), Gaps = 26/295 (8%)
 Frame = -2

Query: 1065 AAMAAWSALKQMSIVGXXXXXXXXXXXXXXXEHLVVARVLSKFSAKRE-NRTLRHRNQSQ 889
            AA+AAWSALK+M  +                +  VVARVLS F +K E N+  R ++ SQ
Sbjct: 148  AAIAAWSALKRMPSL-DYLTNKEVVESREEQDQAVVARVLSNFRSKDEYNKQARKKDCSQ 206

Query: 888  VRKRLILDHR---------------VLQHQQWRTMGLXXXXXXXXSIQQRT---ALLPRA 763
             R+RL+  +R                L +Q  + + L        S Q+++   +LLP  
Sbjct: 207  ARRRLVKGYRDYSSASSSSSSTSSNSLHYQHRKLLDLLLDSALDSSTQKQSSFVSLLPPP 266

Query: 762  XXXXXXXXXXXXXTDESNY---SSLCSPNKGIPVQVKSNSLAMKQDIAPPLEEHQKDEDE 592
                           ++ Y   SS C+P++   +QVK      +      +EEHQKDE+E
Sbjct: 267  PPRTTSKILPPTSPIDNPYSYPSSRCNPHQ---IQVKGKQQTKE------IEEHQKDEEE 317

Query: 591  W--LCKKAIITEKPTGKDPNNANPNSVFRQQPKYLSPFNSSFLDHTQQNIHPRPYRPATS 418
            W    KK+I  E  +    +    +S++RQ P             +  +I  R + P+++
Sbjct: 318  WPGAIKKSIEKESSSS---SVYGSSSLYRQFPH----------QESTSHIGNRIFGPSST 364

Query: 417  MGIRTNGSNATTSQRMLNSGGFHVHNIAPAVHIRSVIPVCATPP--MRPPSSNSP 259
                T  S    S     SG  + H IAPAV IRSVIPVCA PP  +RP  + +P
Sbjct: 365  SIKSTPSSIHMCSNSPFYSGMLYPHRIAPAVQIRSVIPVCAAPPAAVRPAPAPAP 419