BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026182
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22
dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containi...   109   3e-22
gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japo...   109   3e-22
ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group] g...   109   3e-22
ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containi...   108   4e-22

>ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  110 bits (275), Expect = 1e-22
 Identities = 57/170 (33%), Positives = 94/170 (55%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           TA++D+Y KCG +D+A +VF  + +    +   MI GY  N  A EA++L +R++  G+D
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVD 425

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
           +  V  L     + +C   G   +G+ +H  +++ G E     +++LI +Y KC R  LA
Sbjct: 426 VTDVSVLA---ALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLA 482

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSSFAL 11
             +FD+L  K    W  MI G  +NG + +A+ L+  M   +V+P SF L
Sbjct: 483 AQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTL 532



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 49/173 (28%), Positives = 86/173 (49%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           TAL +MY+KC R  +A RVF ++      A   ++ GY  N  A+ A+ ++ R+     D
Sbjct: 264 TALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEE--D 321

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
            +    +    ++ +C    A    +E+HA  ++ G++      ++++ +Y KC  +  A
Sbjct: 322 GERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSSFALSCA 2
           R +FD +  +N   W  MI GY  NG   EAL L+  MV   V+ +  ++  A
Sbjct: 382 RKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAA 434



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
 Frame = -2

Query: 523 ITALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGL 344
           + ALI MY KC R D A +VF ++   T  +   MI G   N  +++A+ L  R     +
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR-----M 520

Query: 343 DIKVVRELGFTCM--IRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRM 170
            ++ V+   FT +  I +        Q + IH + I+   +     L++LI +Y KC R+
Sbjct: 521 QLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 580

Query: 169 VLARCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEM 47
            +AR LF+    ++   W  MI GY  +G    A+EL+ EM
Sbjct: 581 SIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEM 621



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
 Frame = -2

Query: 523 ITALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGL 344
           +TALIDMY+KCGR+  A  +F+   +  +     MI GY ++   K A+ L   +   G 
Sbjct: 567 LTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG- 625

Query: 343 DIKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIK-FGYELGAQTLSSLILLYDKCNRMV 167
             KV  E  F  ++ +C+  G   +GQE  + + + +G E G +   +++ L  +  ++ 
Sbjct: 626 --KVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH 683

Query: 166 LARCLFDKL 140
            A     K+
Sbjct: 684 EAWSFIQKM 692



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
 Frame = -2

Query: 490 GRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDIKVVRELG-- 317
           G + +A    S +  P  AA     D ++   +A  + S +R  L     +      G  
Sbjct: 165 GMLCSAASASSSLPSPITAATHAAPDDHHARLRAAASRSDLRGALAAFAAMSPASGSGPV 224

Query: 316 ---FTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLARCLFD 146
              FT +++ C        G+ +HA +   G    A   ++L  +Y KC R   AR +FD
Sbjct: 225 LRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFD 284

Query: 145 KLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVE 29
           ++  ++   W  +++GY RNG+   A+ + V M   D E
Sbjct: 285 RMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGE 323


>dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group] gi|218190136|gb|EEC72563.1|
           hypothetical protein OsI_05996 [Oryza sativa Indica
           Group]
          Length = 803

 Score =  109 bits (272), Expect = 3e-22
 Identities = 56/167 (33%), Positives = 96/167 (57%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           + L+DMYSKCG+I  A  +F+K++E  +    ++I G   ++  KEA    +++   G+ 
Sbjct: 456 SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGI- 514

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
             +  E  +  MI SC+   +   G++IHA ++K GY+      S+LI +Y KC  M  A
Sbjct: 515 --MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDA 572

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSS 20
           R  FD +++KN   W +MI GY +NG+  +A+EL+  M+  + +P +
Sbjct: 573 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 619



 Score = 74.7 bits (182), Expect = 8e-12
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
 Frame = -2

Query: 496 KCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDIKVVRELG 317
           K   + +A  +F K+S P++    T++ GY    Q ++ + L RR+ H  +         
Sbjct: 363 KARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPD---RTT 419

Query: 316 FTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLARCLFDKLV 137
              ++ SC+  G    G+++H+  ++F         S L+ +Y KC ++ +AR +F+K+ 
Sbjct: 420 LAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMT 479

Query: 136 VKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEP--SSFA 14
            ++   W  +ISG   + +N EA + + +M    + P  SS+A
Sbjct: 480 ERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYA 522



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
 Frame = -2

Query: 517 ALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDI 338
           AL+ MY+KCG + +A R+F  ++ P   + T M+ G        +A+ L  R+   G+ +
Sbjct: 181 ALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPV 240

Query: 337 KVVRELGFTCMIRSC--------TMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDK 182
             V     + ++ +C        ++  A R GQ IHA +++ G+       +SLI +Y K
Sbjct: 241 DPV---SVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTK 297

Query: 181 CNRMVLARCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSSFALS 8
           C  M  A  +F+ L       W  +I+G+ + G   +A+E+   M  A  EP+    S
Sbjct: 298 CVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYS 355


>gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  109 bits (272), Expect = 3e-22
 Identities = 56/167 (33%), Positives = 96/167 (57%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           + L+DMYSKCG+I  A  +F+K++E  +    ++I G   ++  KEA    +++   G+ 
Sbjct: 163 SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGI- 221

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
             +  E  +  MI SC+   +   G++IHA ++K GY+      S+LI +Y KC  M  A
Sbjct: 222 --MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDA 279

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSS 20
           R  FD +++KN   W +MI GY +NG+  +A+EL+  M+  + +P +
Sbjct: 280 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 326



 Score = 74.7 bits (182), Expect = 8e-12
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
 Frame = -2

Query: 496 KCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDIKVVRELG 317
           K   + +A  +F K+S P++    T++ GY    Q ++ + L RR+ H  +         
Sbjct: 70  KARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPD---RTT 126

Query: 316 FTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLARCLFDKLV 137
              ++ SC+  G    G+++H+  ++F         S L+ +Y KC ++ +AR +F+K+ 
Sbjct: 127 LAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMT 186

Query: 136 VKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEP--SSFA 14
            ++   W  +ISG   + +N EA + + +M    + P  SS+A
Sbjct: 187 ERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYA 229


>ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
           gi|113535536|dbj|BAF07919.1| Os02g0167200, partial
           [Oryza sativa Japonica Group]
          Length = 526

 Score =  109 bits (272), Expect = 3e-22
 Identities = 56/167 (33%), Positives = 96/167 (57%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           + L+DMYSKCG+I  A  +F+K++E  +    ++I G   ++  KEA    +++   G+ 
Sbjct: 179 SGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGI- 237

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
             +  E  +  MI SC+   +   G++IHA ++K GY+      S+LI +Y KC  M  A
Sbjct: 238 --MPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDA 295

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSS 20
           R  FD +++KN   W +MI GY +NG+  +A+EL+  M+  + +P +
Sbjct: 296 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 342



 Score = 74.7 bits (182), Expect = 8e-12
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
 Frame = -2

Query: 496 KCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDIKVVRELG 317
           K   + +A  +F K+S P++    T++ GY    Q ++ + L RR+ H  +         
Sbjct: 86  KARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPD---RTT 142

Query: 316 FTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLARCLFDKLV 137
              ++ SC+  G    G+++H+  ++F         S L+ +Y KC ++ +AR +F+K+ 
Sbjct: 143 LAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMT 202

Query: 136 VKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEP--SSFA 14
            ++   W  +ISG   + +N EA + + +M    + P  SS+A
Sbjct: 203 ERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYA 245


>ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  108 bits (271), Expect = 4e-22
 Identities = 58/165 (35%), Positives = 95/165 (57%)
 Frame = -2

Query: 520 TALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLD 341
           ++LI++YSKCG+++ +  VFSK+ E  +    +M+ G++ N+  ++A+S  +++  LG  
Sbjct: 455 SSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGF- 513

Query: 340 IKVVRELGFTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLA 161
                E  F  ++ SC    +  QGQ+ HA I+K G+       SSLI +Y KC  +  A
Sbjct: 514 --FPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGA 571

Query: 160 RCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEP 26
           RC FD +  +N   W +MI GY +NG  H AL LY +M+ +  +P
Sbjct: 572 RCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKP 616



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 44/163 (26%), Positives = 78/163 (47%)
 Frame = -2

Query: 496 KCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGLDIKVVRELG 317
           K G +    ++F  +  P++ +   ++ GYN N   +EA+ L R+   +    +      
Sbjct: 362 KSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRK---MQFQCQHPDRTT 418

Query: 316 FTCMIRSCTMEGACRQGQEIHAHIIKFGYELGAQTLSSLILLYDKCNRMVLARCLFDKLV 137
              ++ SC   G    G+E+HA   KFG+       SSLI +Y KC +M L++ +F KL 
Sbjct: 419 LAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLP 478

Query: 136 VKNEGLWQKMISGYVRNGMNHEALELYVEMVYADVEPSSFALS 8
             +   W  M++G+  N +  +AL  + +M      PS F+ +
Sbjct: 479 ELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFA 521



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 10/173 (5%)
 Frame = -2

Query: 523 ITALIDMYSKCGRIDNACRVFSKVSEPTIAACTTMIDGYNNNNQAKEAMSLIRRILHLGL 344
           + AL+ MY+KCG   +A RVF  + EP     TTM+ G    NQ KEA  L R +L  G+
Sbjct: 176 VNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGI 235

Query: 343 DIKVVRELGFTCMIRSCTM----EGACR------QGQEIHAHIIKFGYELGAQTLSSLIL 194
            +  V     + M+  C       G C       QG+++H   +K G+E      +SL+ 
Sbjct: 236 RVDSV---SLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLD 292

Query: 193 LYDKCNRMVLARCLFDKLVVKNEGLWQKMISGYVRNGMNHEALELYVEMVYAD 35
           +Y K   M  A  +F  L   +   W  MI+GY  N  N E    Y++ + +D
Sbjct: 293 MYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGY-GNRCNSEKAAEYLQRMQSD 344