BLASTX nr result
ID: Coptis24_contig00026176
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026176
(591 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2... 249 3e-64
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi... 248 5e-64
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi... 244 6e-63
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,... 238 7e-61
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ... 219 3e-55
>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
predicted protein [Populus trichocarpa]
Length = 513
Score = 249 bits (635), Expect = 3e-64
Identities = 128/201 (63%), Positives = 156/201 (77%), Gaps = 9/201 (4%)
Frame = +3
Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
L+ MK DG+VV S TFK+LLDAFIR GKF+ A++ILD MEELG+ +P+MY+S+IVAL
Sbjct: 87 LLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALA 146
Query: 183 RKNQIELALSIFNKLLQASNGDG------CVVNALSCNELFVALRKADMKEEFKSVFEKL 344
+KNQ+ LALSI KLL+AS+G+ + +++CN L VALR +MK EFK+VF KL
Sbjct: 147 KKNQVGLALSIMFKLLEASDGNEENAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKL 206
Query: 345 REKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERS---EPDLCTYNSLIHVL 515
R K G EL+TWGYNICIHAFGCWGD TSL+LFKEMKEK S +PDLCTYNSLIHVL
Sbjct: 207 RGKVGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVL 266
Query: 516 CAVGKVKGALVVWEELKDSGH 578
C GKVK A++V+EELK SGH
Sbjct: 267 CLAGKVKDAVIVYEELKVSGH 287
Score = 58.2 bits (139), Expect = 1e-06
Identities = 45/181 (24%), Positives = 85/181 (46%)
Frame = +3
Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
D T+ L+ GK + A+ + ++++ G + Y +I + Q+E + IF
Sbjct: 255 DLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDSTKIF 314
Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
+++ +G + + + N L + KA E +FEK+ + +G W YNI I
Sbjct: 315 SEMQY----NGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQ-DGVRASCWTYNILID 369
Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
G LF +K+KG+ D TY+ ++ +LC G ++ AL + EE+++ G
Sbjct: 370 GLCKNGRAEAGYNLFCGLKKKGQFV--DAVTYSIVVLLLCRKGHLEDALHLVEEMEERGF 427
Query: 579 I 581
+
Sbjct: 428 V 428
>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 248 bits (633), Expect = 5e-64
Identities = 128/197 (64%), Positives = 152/197 (77%), Gaps = 5/197 (2%)
Frame = +3
Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
L+ MK DG+VV TFK+LLD+ IR GKF+ A+EILD +EELGT L+ Y+Y+SV+VAL+
Sbjct: 107 LMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALI 166
Query: 183 RKNQIELALSIFNKLLQASNGDGCVV--NALSCNELFVALRKADMKEEFKSVFEKLREKE 356
RKNQ+ LAL +F KLL G G V + +CN+L VALRKADMK EF++VFEKLR K+
Sbjct: 167 RKNQLGLALPLFFKLLGGDEGQGGVPVPESNACNQLLVALRKADMKIEFRNVFEKLRAKK 226
Query: 357 GNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSLIHVLCAVG 527
+LDT GYNICIHAFGCWGD GT+L LFKEMK+K S PDLCTYNSLI VLC VG
Sbjct: 227 DFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVG 286
Query: 528 KVKGALVVWEELKDSGH 578
KVK AL+VWEELK SGH
Sbjct: 287 KVKDALIVWEELKGSGH 303
Score = 70.5 bits (171), Expect = 2e-10
Identities = 51/184 (27%), Positives = 86/184 (46%)
Frame = +3
Query: 24 DGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIEL 203
D +D V L F+ GK LA ++ + +G Y YNS++ A V+K
Sbjct: 581 DSFDIDMVN--TYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNE 638
Query: 204 ALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGY 383
A +F+++ + C + + N + L K + +V + L K+G LD Y
Sbjct: 639 AWGVFHEMGEKV----CPPDIATYNVIIQGLGKMGRADLASAVLDMLM-KQGGYLDIVMY 693
Query: 384 NICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEEL 563
N I+A G G + KLF++M+ G PD+ T+N+LI + G++K A + +
Sbjct: 694 NTLINALGKAGRIDEATKLFEQMRSSG--INPDVVTFNTLIEIHAKAGQLKAAYKFLKLM 751
Query: 564 KDSG 575
D+G
Sbjct: 752 LDAG 755
Score = 56.6 bits (135), Expect = 3e-06
Identities = 47/181 (25%), Positives = 86/181 (47%)
Frame = +3
Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
D T+ L+ +GK + A+ + ++++ G + Y +I + +++ A+ IF
Sbjct: 271 DLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIF 330
Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
N++ +G + + N L L KA E VFEK+ E +G W +NI I
Sbjct: 331 NEMQY----NGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVE-DGVRASCWTHNIVIC 385
Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
G LF ++K+KG+ D TY+ ++ LC G+++ AL + EE++ G
Sbjct: 386 GLFRNGRAAAGYTLFCDLKKKGKFV--DGITYSIVVLQLCREGQLEEALQLVEEMEARGF 443
Query: 579 I 581
+
Sbjct: 444 V 444
>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
gi|449523383|ref|XP_004168703.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
Length = 803
Score = 244 bits (624), Expect = 6e-63
Identities = 131/205 (63%), Positives = 150/205 (73%), Gaps = 13/205 (6%)
Frame = +3
Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
L++ MK DG+ VDS TFKVLLDAFIR GK++ A+EILD ME+LGT L YNSV+VAL+
Sbjct: 112 LLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAALEILDHMEDLGTSLELNTYNSVLVALL 171
Query: 183 RKNQIELALSIFNKLLQASNGDGCV----------VNALSCNELFVALRKADMKEEFKSV 332
RKNQ+ LALSIF KLL N G V N+L+CNEL VALRK DM+ EFK V
Sbjct: 172 RKNQVGLALSIFFKLLDGFNNGGQVDSAATTFHFLPNSLACNELLVALRKLDMRVEFKKV 231
Query: 333 FEKLREKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSL 503
F+KLR E E +GYNICI+AFGCWG T+L LFKEMKEK SE PDLCTYNS+
Sbjct: 232 FDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSESFSPDLCTYNSI 291
Query: 504 IHVLCAVGKVKGALVVWEELKDSGH 578
IHVLC VGKVK AL+VWEELK SGH
Sbjct: 292 IHVLCLVGKVKDALIVWEELKGSGH 316
Score = 77.8 bits (190), Expect = 1e-12
Identities = 54/171 (31%), Positives = 82/171 (47%)
Frame = +3
Query: 63 LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242
L F+ GK LA ++ + ++G Y YNS++ + V+K A IFN++
Sbjct: 605 LSIFLAKGKLNLACKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEM----G 660
Query: 243 GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422
+ C + + N + L K + SV EKL E +G LD YN I+A G G
Sbjct: 661 ENVCPADIATYNVIIQGLGKMGRADLASSVLEKLME-QGGYLDIVMYNTLINALGKAGRM 719
Query: 423 GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575
KLF +M+ G PD+ T+N+LI V G++K A + + DSG
Sbjct: 720 DDVNKLFGQMRNSG--INPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSG 768
>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 898
Score = 238 bits (606), Expect = 7e-61
Identities = 127/198 (64%), Positives = 149/198 (75%), Gaps = 6/198 (3%)
Frame = +3
Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
L+ MK D +V + TFK LLD FI LG F+ A+E+LD MEELGT L+P+MY+SV+VAL
Sbjct: 135 LLNSMKDDCAIVGTGTFKFLLDTFINLGNFDFALELLDVMEELGTNLNPHMYDSVLVALT 194
Query: 183 RKNQIELALSIFNKLLQASNG---DGCVVNALSCNELFVALRKADMKEEFKSVFEKLREK 353
RKNQI LALSIF KLL+ SN V +++CN L VALRKADM+ EFK VF+KL+
Sbjct: 195 RKNQIGLALSIFFKLLETSNDIDIGVSVPGSVACNTLLVALRKADMRVEFKKVFDKLKGM 254
Query: 354 EGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGE---RSEPDLCTYNSLIHVLCAV 524
G ELDTWGYNICIHAFGCW D GT+L+LFKEMKEK + PDLCTYNSLI +LC
Sbjct: 255 -GFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKSKGFGSCCPDLCTYNSLIRLLCFS 313
Query: 525 GKVKGALVVWEELKDSGH 578
GKVK ALVV+EELK SGH
Sbjct: 314 GKVKDALVVYEELKISGH 331
Score = 73.9 bits (180), Expect = 2e-11
Identities = 51/171 (29%), Positives = 82/171 (47%)
Frame = +3
Query: 63 LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242
L F+ GK +A ++ + ++G Y YNS++ + V+K A + N++ +
Sbjct: 624 LSIFLAKGKLSVACKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKV- 682
Query: 243 GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422
C + + N + L K + SV +KL K+G LD YN I+A G G
Sbjct: 683 ---CPSDIATYNLIIQGLGKMGRADLASSVLDKLM-KQGGYLDIVMYNTLINALGKAGRI 738
Query: 423 GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575
KLF++MK G PD+ TYN+LI V G++K A + + D+G
Sbjct: 739 DEVRKLFEQMKTSG--INPDVVTYNTLIEVHTKAGRLKDAYKFLKMMLDAG 787
Score = 60.5 bits (145), Expect = 2e-07
Identities = 46/181 (25%), Positives = 86/181 (47%)
Frame = +3
Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
D T+ L+ GK + A+ + ++++ G + Y +I + ++ A IF
Sbjct: 299 DLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDATKIF 358
Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
+++ +G V + N L + KA E +FEK+ + +G +W YNI I
Sbjct: 359 SEMQY----NGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQ-DGVRASSWTYNILID 413
Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
G LF ++K+KG+ D TY+ ++ +LC G++K AL + EE+++ G
Sbjct: 414 GLCKNGRSAAGYSLFCDLKKKGKFV--DAITYSIIVLLLCREGQLKEALSLVEEMEERGF 471
Query: 579 I 581
+
Sbjct: 472 V 472
>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297320808|gb|EFH51230.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 802
Score = 219 bits (558), Expect = 3e-55
Identities = 111/201 (55%), Positives = 140/201 (69%), Gaps = 13/201 (6%)
Frame = +3
Query: 15 MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194
MK DG+ +D K+LLD+ IR GKFE A+ +LD MEELG L+P +Y+SV++AL +KN+
Sbjct: 118 MKEDGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSLYDSVLIALAKKNE 177
Query: 195 IELALSIFNKLLQASNGDG---------CVVNALSCNELFVALRKADMKEEFKSVFEKLR 347
+ LALSIF KLL+AS+ G + ++ NEL V LR+ADM+ EFK+VFEKL+
Sbjct: 178 LRLALSIFFKLLEASDNHGDDTSGVTVSYLPGRVAVNELLVGLRRADMRSEFKTVFEKLK 237
Query: 348 EKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEK----GERSEPDLCTYNSLIHVL 515
+ DTW YNICIH FGCWGD +L LFKEMKE+ G PD+CTYNSLIHVL
Sbjct: 238 GMNRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVL 297
Query: 516 CAVGKVKGALVVWEELKDSGH 578
C GK K AL+VW+ELK SGH
Sbjct: 298 CLFGKAKDALIVWDELKVSGH 318
Score = 63.5 bits (153), Expect = 2e-08
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 1/187 (0%)
Frame = +3
Query: 18 KGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELG-TRLSPYMYNSVIVALVRKNQ 194
K D VD + L ++ G LA ++ + +G T L+ Y YNS++ + V+K
Sbjct: 586 KPDSFDVDMMN--TFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGY 643
Query: 195 IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374
+ + +++ + + C + + N + L K + +V ++L K+G LD
Sbjct: 644 FKTVRGVLDQMGE----NFCAADIATYNVIIQGLGKMGRADLAGAVLDRLT-KQGGYLDI 698
Query: 375 WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554
YN I+A G + +LF MK G PD+ +YN++I V GK+K A
Sbjct: 699 VMYNTLINAIGKANRLDAATQLFDHMKSNG--INPDVVSYNTMIEVNSKAGKLKEAYKYL 756
Query: 555 EELKDSG 575
+ + D+G
Sbjct: 757 KAMLDAG 763
Score = 55.8 bits (133), Expect = 5e-06
Identities = 47/187 (25%), Positives = 84/187 (44%)
Frame = +3
Query: 15 MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194
+ G D T+ L+ GK + A+ + D+++ G Y +I + +
Sbjct: 278 VSGSSFAPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYR 337
Query: 195 IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374
++ A+ IF ++ +G V + + N L KA E +FEK+ + EG
Sbjct: 338 MDDAMRIFGEMQY----NGFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQ-EGVRASC 392
Query: 375 WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554
W YNI I G LF ++K+KG+ D T++ ++ LC GK++ A+ +
Sbjct: 393 WTYNILIDGLFRNGRAEAGFTLFCDLKKKGQ--FVDAITFSIVVLQLCREGKLEEAVKLV 450
Query: 555 EELKDSG 575
EE++ G
Sbjct: 451 EEMETRG 457