BLASTX nr result

ID: Coptis24_contig00026176 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026176
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2...   249   3e-64
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   248   5e-64
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi...   244   6e-63
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...   238   7e-61
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...   219   3e-55

>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  249 bits (635), Expect = 3e-64
 Identities = 128/201 (63%), Positives = 156/201 (77%), Gaps = 9/201 (4%)
 Frame = +3

Query: 3   LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
           L+  MK DG+VV S TFK+LLDAFIR GKF+ A++ILD MEELG+  +P+MY+S+IVAL 
Sbjct: 87  LLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALA 146

Query: 183 RKNQIELALSIFNKLLQASNGDG------CVVNALSCNELFVALRKADMKEEFKSVFEKL 344
           +KNQ+ LALSI  KLL+AS+G+        +  +++CN L VALR  +MK EFK+VF KL
Sbjct: 147 KKNQVGLALSIMFKLLEASDGNEENAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKL 206

Query: 345 REKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERS---EPDLCTYNSLIHVL 515
           R K G EL+TWGYNICIHAFGCWGD  TSL+LFKEMKEK   S   +PDLCTYNSLIHVL
Sbjct: 207 RGKVGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVL 266

Query: 516 CAVGKVKGALVVWEELKDSGH 578
           C  GKVK A++V+EELK SGH
Sbjct: 267 CLAGKVKDAVIVYEELKVSGH 287



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 45/181 (24%), Positives = 85/181 (46%)
 Frame = +3

Query: 39  DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
           D  T+  L+      GK + A+ + ++++  G     + Y  +I    +  Q+E +  IF
Sbjct: 255 DLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDSTKIF 314

Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
           +++      +G + + +  N L   + KA    E   +FEK+ + +G     W YNI I 
Sbjct: 315 SEMQY----NGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQ-DGVRASCWTYNILID 369

Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
                G       LF  +K+KG+    D  TY+ ++ +LC  G ++ AL + EE+++ G 
Sbjct: 370 GLCKNGRAEAGYNLFCGLKKKGQFV--DAVTYSIVVLLLCRKGHLEDALHLVEEMEERGF 427

Query: 579 I 581
           +
Sbjct: 428 V 428


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score =  248 bits (633), Expect = 5e-64
 Identities = 128/197 (64%), Positives = 152/197 (77%), Gaps = 5/197 (2%)
 Frame = +3

Query: 3   LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
           L+  MK DG+VV   TFK+LLD+ IR GKF+ A+EILD +EELGT L+ Y+Y+SV+VAL+
Sbjct: 107 LMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALI 166

Query: 183 RKNQIELALSIFNKLLQASNGDGCVV--NALSCNELFVALRKADMKEEFKSVFEKLREKE 356
           RKNQ+ LAL +F KLL    G G V    + +CN+L VALRKADMK EF++VFEKLR K+
Sbjct: 167 RKNQLGLALPLFFKLLGGDEGQGGVPVPESNACNQLLVALRKADMKIEFRNVFEKLRAKK 226

Query: 357 GNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSLIHVLCAVG 527
             +LDT GYNICIHAFGCWGD GT+L LFKEMK+K   S    PDLCTYNSLI VLC VG
Sbjct: 227 DFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVG 286

Query: 528 KVKGALVVWEELKDSGH 578
           KVK AL+VWEELK SGH
Sbjct: 287 KVKDALIVWEELKGSGH 303



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 51/184 (27%), Positives = 86/184 (46%)
 Frame = +3

Query: 24   DGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIEL 203
            D   +D V     L  F+  GK  LA ++ +    +G     Y YNS++ A V+K     
Sbjct: 581  DSFDIDMVN--TYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNE 638

Query: 204  ALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGY 383
            A  +F+++ +      C  +  + N +   L K    +   +V + L  K+G  LD   Y
Sbjct: 639  AWGVFHEMGEKV----CPPDIATYNVIIQGLGKMGRADLASAVLDMLM-KQGGYLDIVMY 693

Query: 384  NICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEEL 563
            N  I+A G  G    + KLF++M+  G    PD+ T+N+LI +    G++K A    + +
Sbjct: 694  NTLINALGKAGRIDEATKLFEQMRSSG--INPDVVTFNTLIEIHAKAGQLKAAYKFLKLM 751

Query: 564  KDSG 575
             D+G
Sbjct: 752  LDAG 755



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 47/181 (25%), Positives = 86/181 (47%)
 Frame = +3

Query: 39  DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
           D  T+  L+     +GK + A+ + ++++  G     + Y  +I    +  +++ A+ IF
Sbjct: 271 DLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIF 330

Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
           N++      +G   + +  N L   L KA    E   VFEK+ E +G     W +NI I 
Sbjct: 331 NEMQY----NGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVE-DGVRASCWTHNIVIC 385

Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
                G       LF ++K+KG+    D  TY+ ++  LC  G+++ AL + EE++  G 
Sbjct: 386 GLFRNGRAAAGYTLFCDLKKKGKFV--DGITYSIVVLQLCREGQLEEALQLVEEMEARGF 443

Query: 579 I 581
           +
Sbjct: 444 V 444


>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
           gi|449523383|ref|XP_004168703.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
          Length = 803

 Score =  244 bits (624), Expect = 6e-63
 Identities = 131/205 (63%), Positives = 150/205 (73%), Gaps = 13/205 (6%)
 Frame = +3

Query: 3   LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
           L++ MK DG+ VDS TFKVLLDAFIR GK++ A+EILD ME+LGT L    YNSV+VAL+
Sbjct: 112 LLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAALEILDHMEDLGTSLELNTYNSVLVALL 171

Query: 183 RKNQIELALSIFNKLLQASNGDGCV----------VNALSCNELFVALRKADMKEEFKSV 332
           RKNQ+ LALSIF KLL   N  G V           N+L+CNEL VALRK DM+ EFK V
Sbjct: 172 RKNQVGLALSIFFKLLDGFNNGGQVDSAATTFHFLPNSLACNELLVALRKLDMRVEFKKV 231

Query: 333 FEKLREKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSL 503
           F+KLR  E  E   +GYNICI+AFGCWG   T+L LFKEMKEK   SE   PDLCTYNS+
Sbjct: 232 FDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSESFSPDLCTYNSI 291

Query: 504 IHVLCAVGKVKGALVVWEELKDSGH 578
           IHVLC VGKVK AL+VWEELK SGH
Sbjct: 292 IHVLCLVGKVKDALIVWEELKGSGH 316



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 54/171 (31%), Positives = 82/171 (47%)
 Frame = +3

Query: 63   LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242
            L  F+  GK  LA ++ +   ++G     Y YNS++ + V+K     A  IFN++     
Sbjct: 605  LSIFLAKGKLNLACKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEM----G 660

Query: 243  GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422
             + C  +  + N +   L K    +   SV EKL E +G  LD   YN  I+A G  G  
Sbjct: 661  ENVCPADIATYNVIIQGLGKMGRADLASSVLEKLME-QGGYLDIVMYNTLINALGKAGRM 719

Query: 423  GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575
                KLF +M+  G    PD+ T+N+LI V    G++K A    + + DSG
Sbjct: 720  DDVNKLFGQMRNSG--INPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSG 768


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score =  238 bits (606), Expect = 7e-61
 Identities = 127/198 (64%), Positives = 149/198 (75%), Gaps = 6/198 (3%)
 Frame = +3

Query: 3   LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182
           L+  MK D  +V + TFK LLD FI LG F+ A+E+LD MEELGT L+P+MY+SV+VAL 
Sbjct: 135 LLNSMKDDCAIVGTGTFKFLLDTFINLGNFDFALELLDVMEELGTNLNPHMYDSVLVALT 194

Query: 183 RKNQIELALSIFNKLLQASNG---DGCVVNALSCNELFVALRKADMKEEFKSVFEKLREK 353
           RKNQI LALSIF KLL+ SN       V  +++CN L VALRKADM+ EFK VF+KL+  
Sbjct: 195 RKNQIGLALSIFFKLLETSNDIDIGVSVPGSVACNTLLVALRKADMRVEFKKVFDKLKGM 254

Query: 354 EGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGE---RSEPDLCTYNSLIHVLCAV 524
            G ELDTWGYNICIHAFGCW D GT+L+LFKEMKEK +      PDLCTYNSLI +LC  
Sbjct: 255 -GFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKSKGFGSCCPDLCTYNSLIRLLCFS 313

Query: 525 GKVKGALVVWEELKDSGH 578
           GKVK ALVV+EELK SGH
Sbjct: 314 GKVKDALVVYEELKISGH 331



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 51/171 (29%), Positives = 82/171 (47%)
 Frame = +3

Query: 63   LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242
            L  F+  GK  +A ++ +   ++G     Y YNS++ + V+K     A  + N++ +   
Sbjct: 624  LSIFLAKGKLSVACKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKV- 682

Query: 243  GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422
               C  +  + N +   L K    +   SV +KL  K+G  LD   YN  I+A G  G  
Sbjct: 683  ---CPSDIATYNLIIQGLGKMGRADLASSVLDKLM-KQGGYLDIVMYNTLINALGKAGRI 738

Query: 423  GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575
                KLF++MK  G    PD+ TYN+LI V    G++K A    + + D+G
Sbjct: 739  DEVRKLFEQMKTSG--INPDVVTYNTLIEVHTKAGRLKDAYKFLKMMLDAG 787



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 46/181 (25%), Positives = 86/181 (47%)
 Frame = +3

Query: 39  DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218
           D  T+  L+      GK + A+ + ++++  G     + Y  +I    +  ++  A  IF
Sbjct: 299 DLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDATKIF 358

Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398
           +++      +G V +    N L   + KA    E   +FEK+ + +G    +W YNI I 
Sbjct: 359 SEMQY----NGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQ-DGVRASSWTYNILID 413

Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578
                G       LF ++K+KG+    D  TY+ ++ +LC  G++K AL + EE+++ G 
Sbjct: 414 GLCKNGRSAAGYSLFCDLKKKGKFV--DAITYSIIVLLLCREGQLKEALSLVEEMEERGF 471

Query: 579 I 581
           +
Sbjct: 472 V 472


>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score =  219 bits (558), Expect = 3e-55
 Identities = 111/201 (55%), Positives = 140/201 (69%), Gaps = 13/201 (6%)
 Frame = +3

Query: 15  MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194
           MK DG+ +D    K+LLD+ IR GKFE A+ +LD MEELG  L+P +Y+SV++AL +KN+
Sbjct: 118 MKEDGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSLYDSVLIALAKKNE 177

Query: 195 IELALSIFNKLLQASNGDG---------CVVNALSCNELFVALRKADMKEEFKSVFEKLR 347
           + LALSIF KLL+AS+  G          +   ++ NEL V LR+ADM+ EFK+VFEKL+
Sbjct: 178 LRLALSIFFKLLEASDNHGDDTSGVTVSYLPGRVAVNELLVGLRRADMRSEFKTVFEKLK 237

Query: 348 EKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEK----GERSEPDLCTYNSLIHVL 515
                + DTW YNICIH FGCWGD   +L LFKEMKE+    G    PD+CTYNSLIHVL
Sbjct: 238 GMNRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVL 297

Query: 516 CAVGKVKGALVVWEELKDSGH 578
           C  GK K AL+VW+ELK SGH
Sbjct: 298 CLFGKAKDALIVWDELKVSGH 318



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 1/187 (0%)
 Frame = +3

Query: 18   KGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELG-TRLSPYMYNSVIVALVRKNQ 194
            K D   VD +     L  ++  G   LA ++ +    +G T L+ Y YNS++ + V+K  
Sbjct: 586  KPDSFDVDMMN--TFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGY 643

Query: 195  IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374
             +    + +++ +    + C  +  + N +   L K    +   +V ++L  K+G  LD 
Sbjct: 644  FKTVRGVLDQMGE----NFCAADIATYNVIIQGLGKMGRADLAGAVLDRLT-KQGGYLDI 698

Query: 375  WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554
              YN  I+A G       + +LF  MK  G    PD+ +YN++I V    GK+K A    
Sbjct: 699  VMYNTLINAIGKANRLDAATQLFDHMKSNG--INPDVVSYNTMIEVNSKAGKLKEAYKYL 756

Query: 555  EELKDSG 575
            + + D+G
Sbjct: 757  KAMLDAG 763



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 47/187 (25%), Positives = 84/187 (44%)
 Frame = +3

Query: 15  MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194
           + G     D  T+  L+      GK + A+ + D+++  G       Y  +I    +  +
Sbjct: 278 VSGSSFAPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYR 337

Query: 195 IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374
           ++ A+ IF ++      +G V + +  N L     KA    E   +FEK+ + EG     
Sbjct: 338 MDDAMRIFGEMQY----NGFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQ-EGVRASC 392

Query: 375 WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554
           W YNI I      G       LF ++K+KG+    D  T++ ++  LC  GK++ A+ + 
Sbjct: 393 WTYNILIDGLFRNGRAEAGFTLFCDLKKKGQ--FVDAITFSIVVLQLCREGKLEEAVKLV 450

Query: 555 EELKDSG 575
           EE++  G
Sbjct: 451 EEMETRG 457


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