BLASTX nr result
ID: Coptis24_contig00026176
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026176 (591 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2... 249 3e-64 ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi... 248 5e-64 ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi... 244 6e-63 ref|XP_002515124.1| pentatricopeptide repeat-containing protein,... 238 7e-61 ref|XP_002874971.1| pentatricopeptide repeat-containing protein ... 219 3e-55 >ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1| predicted protein [Populus trichocarpa] Length = 513 Score = 249 bits (635), Expect = 3e-64 Identities = 128/201 (63%), Positives = 156/201 (77%), Gaps = 9/201 (4%) Frame = +3 Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182 L+ MK DG+VV S TFK+LLDAFIR GKF+ A++ILD MEELG+ +P+MY+S+IVAL Sbjct: 87 LLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALA 146 Query: 183 RKNQIELALSIFNKLLQASNGDG------CVVNALSCNELFVALRKADMKEEFKSVFEKL 344 +KNQ+ LALSI KLL+AS+G+ + +++CN L VALR +MK EFK+VF KL Sbjct: 147 KKNQVGLALSIMFKLLEASDGNEENAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKL 206 Query: 345 REKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERS---EPDLCTYNSLIHVL 515 R K G EL+TWGYNICIHAFGCWGD TSL+LFKEMKEK S +PDLCTYNSLIHVL Sbjct: 207 RGKVGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVL 266 Query: 516 CAVGKVKGALVVWEELKDSGH 578 C GKVK A++V+EELK SGH Sbjct: 267 CLAGKVKDAVIVYEELKVSGH 287 Score = 58.2 bits (139), Expect = 1e-06 Identities = 45/181 (24%), Positives = 85/181 (46%) Frame = +3 Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218 D T+ L+ GK + A+ + ++++ G + Y +I + Q+E + IF Sbjct: 255 DLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDSTKIF 314 Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398 +++ +G + + + N L + KA E +FEK+ + +G W YNI I Sbjct: 315 SEMQY----NGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQ-DGVRASCWTYNILID 369 Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578 G LF +K+KG+ D TY+ ++ +LC G ++ AL + EE+++ G Sbjct: 370 GLCKNGRAEAGYNLFCGLKKKGQFV--DAVTYSIVVLLLCRKGHLEDALHLVEEMEERGF 427 Query: 579 I 581 + Sbjct: 428 V 428 >ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Vitis vinifera] Length = 792 Score = 248 bits (633), Expect = 5e-64 Identities = 128/197 (64%), Positives = 152/197 (77%), Gaps = 5/197 (2%) Frame = +3 Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182 L+ MK DG+VV TFK+LLD+ IR GKF+ A+EILD +EELGT L+ Y+Y+SV+VAL+ Sbjct: 107 LMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALI 166 Query: 183 RKNQIELALSIFNKLLQASNGDGCVV--NALSCNELFVALRKADMKEEFKSVFEKLREKE 356 RKNQ+ LAL +F KLL G G V + +CN+L VALRKADMK EF++VFEKLR K+ Sbjct: 167 RKNQLGLALPLFFKLLGGDEGQGGVPVPESNACNQLLVALRKADMKIEFRNVFEKLRAKK 226 Query: 357 GNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSLIHVLCAVG 527 +LDT GYNICIHAFGCWGD GT+L LFKEMK+K S PDLCTYNSLI VLC VG Sbjct: 227 DFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVG 286 Query: 528 KVKGALVVWEELKDSGH 578 KVK AL+VWEELK SGH Sbjct: 287 KVKDALIVWEELKGSGH 303 Score = 70.5 bits (171), Expect = 2e-10 Identities = 51/184 (27%), Positives = 86/184 (46%) Frame = +3 Query: 24 DGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIEL 203 D +D V L F+ GK LA ++ + +G Y YNS++ A V+K Sbjct: 581 DSFDIDMVN--TYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNE 638 Query: 204 ALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGY 383 A +F+++ + C + + N + L K + +V + L K+G LD Y Sbjct: 639 AWGVFHEMGEKV----CPPDIATYNVIIQGLGKMGRADLASAVLDMLM-KQGGYLDIVMY 693 Query: 384 NICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEEL 563 N I+A G G + KLF++M+ G PD+ T+N+LI + G++K A + + Sbjct: 694 NTLINALGKAGRIDEATKLFEQMRSSG--INPDVVTFNTLIEIHAKAGQLKAAYKFLKLM 751 Query: 564 KDSG 575 D+G Sbjct: 752 LDAG 755 Score = 56.6 bits (135), Expect = 3e-06 Identities = 47/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218 D T+ L+ +GK + A+ + ++++ G + Y +I + +++ A+ IF Sbjct: 271 DLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIF 330 Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398 N++ +G + + N L L KA E VFEK+ E +G W +NI I Sbjct: 331 NEMQY----NGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVE-DGVRASCWTHNIVIC 385 Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578 G LF ++K+KG+ D TY+ ++ LC G+++ AL + EE++ G Sbjct: 386 GLFRNGRAAAGYTLFCDLKKKGKFV--DGITYSIVVLQLCREGQLEEALQLVEEMEARGF 443 Query: 579 I 581 + Sbjct: 444 V 444 >ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like [Cucumis sativus] gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like [Cucumis sativus] Length = 803 Score = 244 bits (624), Expect = 6e-63 Identities = 131/205 (63%), Positives = 150/205 (73%), Gaps = 13/205 (6%) Frame = +3 Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182 L++ MK DG+ VDS TFKVLLDAFIR GK++ A+EILD ME+LGT L YNSV+VAL+ Sbjct: 112 LLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAALEILDHMEDLGTSLELNTYNSVLVALL 171 Query: 183 RKNQIELALSIFNKLLQASNGDGCV----------VNALSCNELFVALRKADMKEEFKSV 332 RKNQ+ LALSIF KLL N G V N+L+CNEL VALRK DM+ EFK V Sbjct: 172 RKNQVGLALSIFFKLLDGFNNGGQVDSAATTFHFLPNSLACNELLVALRKLDMRVEFKKV 231 Query: 333 FEKLREKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSL 503 F+KLR E E +GYNICI+AFGCWG T+L LFKEMKEK SE PDLCTYNS+ Sbjct: 232 FDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSESFSPDLCTYNSI 291 Query: 504 IHVLCAVGKVKGALVVWEELKDSGH 578 IHVLC VGKVK AL+VWEELK SGH Sbjct: 292 IHVLCLVGKVKDALIVWEELKGSGH 316 Score = 77.8 bits (190), Expect = 1e-12 Identities = 54/171 (31%), Positives = 82/171 (47%) Frame = +3 Query: 63 LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242 L F+ GK LA ++ + ++G Y YNS++ + V+K A IFN++ Sbjct: 605 LSIFLAKGKLNLACKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEM----G 660 Query: 243 GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422 + C + + N + L K + SV EKL E +G LD YN I+A G G Sbjct: 661 ENVCPADIATYNVIIQGLGKMGRADLASSVLEKLME-QGGYLDIVMYNTLINALGKAGRM 719 Query: 423 GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575 KLF +M+ G PD+ T+N+LI V G++K A + + DSG Sbjct: 720 DDVNKLFGQMRNSG--INPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSG 768 >ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545604|gb|EEF47108.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 898 Score = 238 bits (606), Expect = 7e-61 Identities = 127/198 (64%), Positives = 149/198 (75%), Gaps = 6/198 (3%) Frame = +3 Query: 3 LIELMKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALV 182 L+ MK D +V + TFK LLD FI LG F+ A+E+LD MEELGT L+P+MY+SV+VAL Sbjct: 135 LLNSMKDDCAIVGTGTFKFLLDTFINLGNFDFALELLDVMEELGTNLNPHMYDSVLVALT 194 Query: 183 RKNQIELALSIFNKLLQASNG---DGCVVNALSCNELFVALRKADMKEEFKSVFEKLREK 353 RKNQI LALSIF KLL+ SN V +++CN L VALRKADM+ EFK VF+KL+ Sbjct: 195 RKNQIGLALSIFFKLLETSNDIDIGVSVPGSVACNTLLVALRKADMRVEFKKVFDKLKGM 254 Query: 354 EGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEKGE---RSEPDLCTYNSLIHVLCAV 524 G ELDTWGYNICIHAFGCW D GT+L+LFKEMKEK + PDLCTYNSLI +LC Sbjct: 255 -GFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKSKGFGSCCPDLCTYNSLIRLLCFS 313 Query: 525 GKVKGALVVWEELKDSGH 578 GKVK ALVV+EELK SGH Sbjct: 314 GKVKDALVVYEELKISGH 331 Score = 73.9 bits (180), Expect = 2e-11 Identities = 51/171 (29%), Positives = 82/171 (47%) Frame = +3 Query: 63 LDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIFNKLLQASN 242 L F+ GK +A ++ + ++G Y YNS++ + V+K A + N++ + Sbjct: 624 LSIFLAKGKLSVACKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKV- 682 Query: 243 GDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIHAFGCWGDF 422 C + + N + L K + SV +KL K+G LD YN I+A G G Sbjct: 683 ---CPSDIATYNLIIQGLGKMGRADLASSVLDKLM-KQGGYLDIVMYNTLINALGKAGRI 738 Query: 423 GTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSG 575 KLF++MK G PD+ TYN+LI V G++K A + + D+G Sbjct: 739 DEVRKLFEQMKTSG--INPDVVTYNTLIEVHTKAGRLKDAYKFLKMMLDAG 787 Score = 60.5 bits (145), Expect = 2e-07 Identities = 46/181 (25%), Positives = 86/181 (47%) Frame = +3 Query: 39 DSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQIELALSIF 218 D T+ L+ GK + A+ + ++++ G + Y +I + ++ A IF Sbjct: 299 DLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDATKIF 358 Query: 219 NKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDTWGYNICIH 398 +++ +G V + N L + KA E +FEK+ + +G +W YNI I Sbjct: 359 SEMQY----NGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQ-DGVRASSWTYNILID 413 Query: 399 AFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVWEELKDSGH 578 G LF ++K+KG+ D TY+ ++ +LC G++K AL + EE+++ G Sbjct: 414 GLCKNGRSAAGYSLFCDLKKKGKFV--DAITYSIIVLLLCREGQLKEALSLVEEMEERGF 471 Query: 579 I 581 + Sbjct: 472 V 472 >ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320808|gb|EFH51230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 802 Score = 219 bits (558), Expect = 3e-55 Identities = 111/201 (55%), Positives = 140/201 (69%), Gaps = 13/201 (6%) Frame = +3 Query: 15 MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194 MK DG+ +D K+LLD+ IR GKFE A+ +LD MEELG L+P +Y+SV++AL +KN+ Sbjct: 118 MKEDGVNLDQTMAKILLDSLIRSGKFESALGVLDYMEELGDCLNPSLYDSVLIALAKKNE 177 Query: 195 IELALSIFNKLLQASNGDG---------CVVNALSCNELFVALRKADMKEEFKSVFEKLR 347 + LALSIF KLL+AS+ G + ++ NEL V LR+ADM+ EFK+VFEKL+ Sbjct: 178 LRLALSIFFKLLEASDNHGDDTSGVTVSYLPGRVAVNELLVGLRRADMRSEFKTVFEKLK 237 Query: 348 EKEGNELDTWGYNICIHAFGCWGDFGTSLKLFKEMKEK----GERSEPDLCTYNSLIHVL 515 + DTW YNICIH FGCWGD +L LFKEMKE+ G PD+CTYNSLIHVL Sbjct: 238 GMNRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVL 297 Query: 516 CAVGKVKGALVVWEELKDSGH 578 C GK K AL+VW+ELK SGH Sbjct: 298 CLFGKAKDALIVWDELKVSGH 318 Score = 63.5 bits (153), Expect = 2e-08 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 1/187 (0%) Frame = +3 Query: 18 KGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELG-TRLSPYMYNSVIVALVRKNQ 194 K D VD + L ++ G LA ++ + +G T L+ Y YNS++ + V+K Sbjct: 586 KPDSFDVDMMN--TFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGY 643 Query: 195 IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374 + + +++ + + C + + N + L K + +V ++L K+G LD Sbjct: 644 FKTVRGVLDQMGE----NFCAADIATYNVIIQGLGKMGRADLAGAVLDRLT-KQGGYLDI 698 Query: 375 WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554 YN I+A G + +LF MK G PD+ +YN++I V GK+K A Sbjct: 699 VMYNTLINAIGKANRLDAATQLFDHMKSNG--INPDVVSYNTMIEVNSKAGKLKEAYKYL 756 Query: 555 EELKDSG 575 + + D+G Sbjct: 757 KAMLDAG 763 Score = 55.8 bits (133), Expect = 5e-06 Identities = 47/187 (25%), Positives = 84/187 (44%) Frame = +3 Query: 15 MKGDGLVVDSVTFKVLLDAFIRLGKFELAIEILDDMEELGTRLSPYMYNSVIVALVRKNQ 194 + G D T+ L+ GK + A+ + D+++ G Y +I + + Sbjct: 278 VSGSSFAPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYR 337 Query: 195 IELALSIFNKLLQASNGDGCVVNALSCNELFVALRKADMKEEFKSVFEKLREKEGNELDT 374 ++ A+ IF ++ +G V + + N L KA E +FEK+ + EG Sbjct: 338 MDDAMRIFGEMQY----NGFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQ-EGVRASC 392 Query: 375 WGYNICIHAFGCWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGKVKGALVVW 554 W YNI I G LF ++K+KG+ D T++ ++ LC GK++ A+ + Sbjct: 393 WTYNILIDGLFRNGRAEAGFTLFCDLKKKGQ--FVDAITFSIVVLQLCREGKLEEAVKLV 450 Query: 555 EELKDSG 575 EE++ G Sbjct: 451 EEMETRG 457