BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026142
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi...   130   9e-29
emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]   130   9e-29
ref|XP_003520418.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_002528029.1| pentatricopeptide repeat-containing protein,...   127   9e-28
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27

>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  130 bits (328), Expect = 9e-29
 Identities = 58/115 (50%), Positives = 88/115 (76%)
 Frame = +2

Query: 2   IEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGFKPNHFTFQVVLSI 181
           I KAKL F   P+KGSM WTA+IEAYG+N+ +QDA++L+  M ++GF PNH+TF+ VLSI
Sbjct: 609 ISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSI 668

Query: 182 CDKAGFVNEACQIFDSMVKRYNVKPSEEHFNSIIELLTRLQFADEVLRYVRLKSS 346
           C++A   ++AC IF+ M +RY +K S EH++SIIELL R+   ++  R+++++S+
Sbjct: 669 CERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDAQRFIQMRSA 723


>emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]
          Length = 664

 Score =  130 bits (328), Expect = 9e-29
 Identities = 58/115 (50%), Positives = 88/115 (76%)
 Frame = +2

Query: 2   IEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGFKPNHFTFQVVLSI 181
           I KAKL F   P+KGSM WTA+IEAYG+N+ +QDA++L+  M ++GF PNH+TF+ VLSI
Sbjct: 548 ISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSI 607

Query: 182 CDKAGFVNEACQIFDSMVKRYNVKPSEEHFNSIIELLTRLQFADEVLRYVRLKSS 346
           C++A   ++AC IF+ M +RY +K S EH++SIIELL R+   ++  R+++++S+
Sbjct: 608 CERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDAQRFIQMRSA 662


>ref|XP_003520418.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Glycine max]
          Length = 502

 Score =  129 bits (325), Expect = 2e-28
 Identities = 64/116 (55%), Positives = 84/116 (72%)
 Frame = +2

Query: 2   IEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGFKPNHFTFQVVLSI 181
           ++KAKLVF   P KGSM W+ALI AYG+   +Q+A+DL+D MI+NG  PN FTF+ VLSI
Sbjct: 388 VDKAKLVFRAIPVKGSMAWSALIRAYGYKEWYQEAVDLFDNMISNGCSPNRFTFEAVLSI 447

Query: 182 CDKAGFVNEACQIFDSMVKRYNVKPSEEHFNSIIELLTRLQFADEVLRYVRLKSSI 349
           CD+AGFV +A +IFD ++ RY +  SEEH   +I LLTR    DEV R+V + SS+
Sbjct: 448 CDRAGFVEDAFRIFD-LMSRYKIDASEEHCTCMIRLLTRYGKLDEVQRFVEMSSSL 502


>ref|XP_002528029.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532559|gb|EEF34347.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 208

 Score =  127 bits (319), Expect = 9e-28
 Identities = 59/112 (52%), Positives = 80/112 (71%)
 Frame = +2

Query: 11  AKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGFKPNHFTFQVVLSICDK 190
           AK  F   P KGSM WTA+IEA+GHNN  +DA+ L+  MI+ GF P HFTF VVL+ICD+
Sbjct: 95  AKSFFHAIPVKGSMAWTAIIEAHGHNNLQRDAIHLFHEMISGGFTPTHFTFTVVLNICDQ 154

Query: 191 AGFVNEACQIFDSMVKRYNVKPSEEHFNSIIELLTRLQFADEVLRYVRLKSS 346
           AGF ++AC+IF+ M +RY +K SEEH++ +I LLTR     E  ++ ++ SS
Sbjct: 155 AGFADDACRIFELMSRRYKIKASEEHYSVLIGLLTRAGRIQEAKKFTQMSSS 206


>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 716

 Score =  127 bits (318), Expect = 1e-27
 Identities = 59/108 (54%), Positives = 79/108 (73%)
 Frame = +2

Query: 2   IEKAKLVFDTNPSKGSMTWTALIEAYGHNNRHQDALDLYDLMITNGFKPNHFTFQVVLSI 181
           ++ AK+VF+  P KG MTWTA+IEAYG +   Q+A+DL+D M + G  PNHFTF+VVLSI
Sbjct: 572 VKMAKMVFEAIPVKGPMTWTAIIEAYGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSI 631

Query: 182 CDKAGFVNEACQIFDSMVKRYNVKPSEEHFNSIIELLTRLQFADEVLR 325
           C +AGFV+EA +IF  M  RY +KPSEEH++ +I +LTR    +E  R
Sbjct: 632 CKEAGFVDEALRIFKLMSVRYKIKPSEEHYSLVIAILTRFGRLEEARR 679