BLASTX nr result
ID: Coptis24_contig00026136
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026136
(623 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 113 2e-23
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 110 2e-22
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 107 1e-21
ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [S... 107 1e-21
ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group] g... 102 4e-20
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 113 bits (283), Expect = 2e-23
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Frame = -1
Query: 611 DLGYEGVPFTWTNKRFKNNGADLIKKRLDRAIANTEWRVLFPNARTINLPIIKSDHGPIV 432
D+G++G FTW R ++ + KRLDR + + R+ + A +LP SDH PI
Sbjct: 585 DMGFKGNKFTWKRGRVEST---FVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIY 641
Query: 431 VYLKPPPA--PTRKQFHFQSMWINEPECKHVISKAWNTRYRGSQSYRFCXXXXXXXXXXX 258
+ L+P P R+ F F++ W+ K ++ +WNT +
Sbjct: 642 IQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVALA------ALKSKLK 695
Query: 257 KWNRDVFGNIHHRIQSLREEIKQCQLDPKTNP-----AVENNLIQDLNQASQLEEKLWRD 93
KWNR+VFG+++ R +SL EIK Q + N + E LI++ + + EE LW
Sbjct: 696 KWNREVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQ 755
Query: 92 KSRDTMLHCDGTNSRYFHLSTVV--RRNRIEI 3
KSR+ + N++YFH TVV RRNRIE+
Sbjct: 756 KSREKWVELGDRNTKYFHTMTVVRRRRNRIEM 787
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 110 bits (276), Expect = 2e-22
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 7/210 (3%)
Frame = -1
Query: 611 DLGYEGVPFTWTNKRFKNNGADLIKKRLDRAIANTEWRVLFPNARTINLPIIKSDHGPIV 432
DLG+EG FTW N G I++RLDRA+AN EWR +FP AR IN SDH P++
Sbjct: 418 DLGFEGDAFTWRNHSHSQEG--YIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVI 475
Query: 431 VYLKPPPAPTR-----KQFHFQSMWINEPECKHVISKAWNTRYRGSQSYRFCXXXXXXXX 267
+ L+ R F F++ W+ E + K V+ +AW+ G Q
Sbjct: 476 IELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVS-AGLQGLPVHASLAGVAA 534
Query: 266 XXXKWNRDVFGNIHHRIQSLREEIKQCQLDPKTNPAV--ENNLIQDLNQASQLEEKLWRD 93
W+ +V G++ R++ +++E++ C+ P + V E L L + Q + W+
Sbjct: 535 GLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQ 594
Query: 92 KSRDTMLHCDGTNSRYFHLSTVVRRNRIEI 3
++ L+ N+ +FH S RR R I
Sbjct: 595 RAHTNWLNKGDRNTSFFHASCSERRRRNRI 624
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 107 bits (268), Expect = 1e-21
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 5/203 (2%)
Frame = -1
Query: 614 VDLGYEGVPFTWTNKRFKNNGADLIKKRLDRAIANTEWRVLFPNARTINLPIIKSDHGPI 435
+DLG++G FTWTN R G LIK+RLDRA+ N+EW LFP+ + I+LP SDH P+
Sbjct: 173 LDLGFQGPKFTWTNGR---TGGSLIKERLDRALVNSEWLDLFPDTKVIHLPRTFSDHCPL 229
Query: 434 VVYLKPPPAPTRKQFHFQSMWINEPECKHVISKAWNTRYRGSQSYRFCXXXXXXXXXXXK 255
++ P F + +W P+ +VI + W GS +
Sbjct: 230 LILFNENPRSESFPFRCKEVWAYHPDFTNVIEETW-----GSHHNSYVAARDLFLSSVKS 284
Query: 254 WNRDVFGNIHHRIQSLREEIKQCQLDPKTNPAV-----ENNLIQDLNQASQLEEKLWRDK 90
W++ VFG+I + + + + Q +P+V E +L+ +LN+ S+ E W K
Sbjct: 285 WSKYVFGSIFQKKKRILARLGGIQKSLSIHPSVFLSKLEIDLLVELNELSKQERVFWAQK 344
Query: 89 SRDTMLHCDGTNSRYFHLSTVVR 21
+ N++YFH +R
Sbjct: 345 AGIDRAKLGDMNTKYFHTLAKIR 367
>ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [Sorghum bicolor]
gi|241923030|gb|EER96174.1| hypothetical protein
SORBIDRAFT_02g008045 [Sorghum bicolor]
Length = 723
Score = 107 bits (268), Expect = 1e-21
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Frame = -1
Query: 617 FVDLGYEGVPFTWTNKRFKNNGADLIKKRLDRAIANTEWRVLFPNARTINLPIIKSDHGP 438
F DLGYEG +WT ++ K G + RLDR +AN +W FP A +L SDHGP
Sbjct: 471 FTDLGYEGR--SWTFEK-KVAGGTYCRTRLDRGLANADWCCRFPEASVKHLTAAASDHGP 527
Query: 437 IVVYLK--PPPAPTRKQFHFQSMWINEPECKHVISKAWNTRYRGSQSYRFCXXXXXXXXX 264
I++ + P ++QF ++ MW + + ++ +W +
Sbjct: 528 ILLQWRSVQRPRKQKRQFRYEQMWETHLDFSNTLADSWRRDGEAISTLELKAKLKGVANH 587
Query: 263 XXKWNRDVFGNIHHRIQSLREEIKQCQLDP-KTNPA-VENNLIQDLNQASQLEEKLWRDK 90
+W+R FGN+ ++ L +E+++ Q DP + P+ E +++ + + + EE +WR +
Sbjct: 588 LVQWDRTTFGNVREELRRLHKELERMQQDPQRLGPSYAELKVVERIRELNHREELMWRQR 647
Query: 89 SRDTMLHCDGTNSRYFHLSTVVRRNRIEI 3
SR L N+R+FHL RR R I
Sbjct: 648 SRVMWLAAGDRNTRFFHLRASKRRKRNRI 676
>ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group]
gi|255676397|dbj|BAH93171.1| Os05g0434000 [Oryza sativa
Japonica Group]
Length = 1478
Score = 102 bits (255), Expect = 4e-20
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 7/207 (3%)
Frame = -1
Query: 611 DLGYEGVPFTWTNKRFKNNGADLIKKRLDRAIANTEWRVLFPNARTINLPIIKSDHGPIV 432
DLG+ G FTW N + ++ IK+RLDRA+AN WR FP R IN SDH ++
Sbjct: 511 DLGFVGDAFTWRNHH--HLASNYIKERLDRAVANGAWRARFPLVRVINGDPRHSDHRSVI 568
Query: 431 VYLKPPP-----APTRKQFHFQSMWINEPECKHVISKAWNTRYRGSQSYRFCXXXXXXXX 267
V P F++ W+ E EC+ + +AW G Q+ R
Sbjct: 569 VETGATEKQQWGQPLEIMQKFEARWLEEEECQARVEEAWENALEGGQT-RLMEIQSRVLK 627
Query: 266 XXXKWNRDVFGNIHHRIQSLREEIKQCQLDPKTNPAV--ENNLIQDLNQASQLEEKLWRD 93
W+R V G + R+++LR+E+++C+ +P +N V E+ L L + + W+
Sbjct: 628 ELWAWDRTVLGELKKRVKNLRKELEKCRREPISNRQVNREHLLRYKLERLLDQQHIYWKQ 687
Query: 92 KSRDTMLHCDGTNSRYFHLSTVVRRNR 12
++ T L N+++FH ++ R
Sbjct: 688 RAHSTWLTKGDRNTKFFHAQASEKKKR 714