BLASTX nr result

ID: Coptis24_contig00026118 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026118
         (610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]     94   2e-17
ref|XP_002322762.1| predicted protein [Populus trichocarpa] gi|2...    94   3e-17
emb|CBI29005.3| unnamed protein product [Vitis vinifera]               93   3e-17
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...    92   6e-17
emb|CBI24015.3| unnamed protein product [Vitis vinifera]               92   6e-17

>dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 38/47 (80%), Positives = 44/47 (93%)
 Frame = +2

Query: 2   VKNLRVCRDCHDVSKLISKVYDREIIVRDRNRFHHFKNGRCSCMDYW 142
           VKNLRVC+DCHD +KLISKV+DREI++RDRNRFHHFK+G CSC DYW
Sbjct: 582 VKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>ref|XP_002322762.1| predicted protein [Populus trichocarpa] gi|222867392|gb|EEF04523.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 39/47 (82%), Positives = 42/47 (89%)
 Frame = +2

Query: 2   VKNLRVCRDCHDVSKLISKVYDREIIVRDRNRFHHFKNGRCSCMDYW 142
           VKNLRVC DCH  +KLISKVY+RE+IVRDRNRFHHFK G CSCMDYW
Sbjct: 571 VKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 39/47 (82%), Positives = 44/47 (93%)
 Frame = +2

Query: 2   VKNLRVCRDCHDVSKLISKVYDREIIVRDRNRFHHFKNGRCSCMDYW 142
           VKNLRVCRDCH V+KLISKVY REIIVRDRNRFHHF++G CSC+D+W
Sbjct: 541 VKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 37/47 (78%), Positives = 44/47 (93%)
 Frame = +2

Query: 2   VKNLRVCRDCHDVSKLISKVYDREIIVRDRNRFHHFKNGRCSCMDYW 142
           VKNLR+C DCHDVSK+ISK+++REIIVRDRNRFHHFK+G CSC D+W
Sbjct: 568 VKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 38/46 (82%), Positives = 41/46 (89%)
 Frame = +2

Query: 5   KNLRVCRDCHDVSKLISKVYDREIIVRDRNRFHHFKNGRCSCMDYW 142
           KNLR+CRDCH  SKLISKVYDREII+RDRNRFHHF+ G CSC DYW
Sbjct: 524 KNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


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