BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026107
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    75   5e-12
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    57   1e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
 Frame = -1

Query: 404 DFLNWFNTCELQRSDHVGLKYTWCNNQHGRGRILARLDRAFYNQACSQKFAG-WRYKVGS 228
           DF+NW N   L     +G  YTW N + G   +  RLDRA     C++++   WR    S
Sbjct: 160 DFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAI----CNEEWVNFWRSSSCS 215

Query: 227 --------REGSDHAPLLGAVVHIPRPYNVPFLFNQAWTEHRDFMRI---SWPHYVEGTP 81
                   R  SDH PLL ++       +  F F + WTEH D  RI   +W  +  G  
Sbjct: 216 ALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHEDCRRIVAENWSKHTRGHG 275

Query: 80  IFRFSKKLKMMKEALKNVN--VFGDIEQ 3
           + R   KLK MK+  ++ N  VFGD+++
Sbjct: 276 MTRLQAKLKHMKQVFRHWNRTVFGDVDR 303


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
 Frame = -1

Query: 353 GLKYTWCNNQHGRGRILARLDRAFYNQACSQKFAGWRYKVGSREGSDHAPLLGAVVHIPR 174
           G+ YTW +NQ     I+ +LDR   N+  + KF     +      SDH+P++  V+   +
Sbjct: 558 GMHYTW-SNQCPENLIMRKLDRVLVNEKWNLKFPLSEARFLPSGMSDHSPMVVKVIGNDQ 616

Query: 173 PYNVPFLFNQAWTEHRDFMRI---SWPHYVEGTPIFRFSKKLKMMKEALKNVNV 21
               PF F   W +H +FM +    W     G P+++   KL+ +K+ LK  N+
Sbjct: 617 NKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQELKLFNM 670