BLASTX nr result

ID: Coptis24_contig00026084 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026084
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301476.1| multidrug resistance protein ABC transporter...   187   6e-46
ref|NP_191829.1| ABC transporter C family member 14 [Arabidopsis...   186   1e-45
ref|XP_002878472.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata] g...   184   9e-45
ref|XP_002880324.1| ATMRP4 [Arabidopsis lyrata subsp. lyrata] gi...   182   2e-44
ref|XP_002523063.1| multidrug resistance-associated protein 2, 6...   182   2e-44

>ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222843202|gb|EEE80749.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1508

 Score =  187 bits (476), Expect = 6e-46
 Identities = 92/155 (59%), Positives = 118/155 (76%)
 Frame = +2

Query: 2    VVLLWSTPAIVTTLSFGTTIWLGFPLDSGTIFSATSLIKILQEPIWGFPQALTSISQAMI 181
            ++++WS P +V+TL+FGT + LG PLD+GT+F+ TS+ KILQEPI  FPQ++ S+SQAM+
Sbjct: 553  IIVMWSAPLLVSTLTFGTALLLGVPLDAGTVFTTTSVFKILQEPIRTFPQSMISLSQAMV 612

Query: 182  SLGRLDGYLMSKXXXXXXXXXXXXXXXSFAIEVKDGMFAWDDDDGEIVLKKLNLRIKKGE 361
            SL RLD Y++SK                 A+++KDG+F+WDD+  + VLK +NL IKKGE
Sbjct: 613  SLSRLDRYMISKELVEESVERVDGCDDRIAVQIKDGVFSWDDETEDDVLKNINLEIKKGE 672

Query: 362  LAAIVGTVGSRKSSLLASILGEMHKISGKVRVYGT 466
            L AIVGTVGS KSSLLASILGEMHKISGKVRV GT
Sbjct: 673  LTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGT 707


>ref|NP_191829.1| ABC transporter C family member 14 [Arabidopsis thaliana]
            gi|75335712|sp|Q9LZJ5.1|AB14C_ARATH RecName: Full=ABC
            transporter C family member 14; Short=ABC transporter
            ABCC.14; Short=AtABCC14; AltName: Full=ATP-energized
            glutathione S-conjugate pump 10; AltName:
            Full=Glutathione S-conjugate-transporting ATPase 10;
            AltName: Full=Multidrug resistance-associated protein 10
            gi|7362750|emb|CAB83120.1| ABC transporter-like protein
            [Arabidopsis thaliana] gi|332646860|gb|AEE80381.1| ABC
            transporter C family member 14 [Arabidopsis thaliana]
          Length = 1539

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/155 (56%), Positives = 118/155 (76%)
 Frame = +2

Query: 2    VVLLWSTPAIVTTLSFGTTIWLGFPLDSGTIFSATSLIKILQEPIWGFPQALTSISQAMI 181
            +++LWSTP +++ L+F T ++LG  LD+GT+F+ T++ KILQEPI  FPQ++ S+SQAMI
Sbjct: 549  IIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMI 608

Query: 182  SLGRLDGYLMSKXXXXXXXXXXXXXXXSFAIEVKDGMFAWDDDDGEIVLKKLNLRIKKGE 361
            SLGRLD Y+MS+               + A+E+KDG F+WDD+D E  ++ +N  +KKGE
Sbjct: 609  SLGRLDAYMMSRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGE 668

Query: 362  LAAIVGTVGSRKSSLLASILGEMHKISGKVRVYGT 466
            LAAIVGTVGS KSSLLAS+LGEMHK+SGKVRV GT
Sbjct: 669  LAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGT 703


>ref|XP_002878472.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata]
            gi|297324310|gb|EFH54731.1| ATMRP10 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1546

 Score =  184 bits (466), Expect = 9e-45
 Identities = 86/155 (55%), Positives = 118/155 (76%)
 Frame = +2

Query: 2    VVLLWSTPAIVTTLSFGTTIWLGFPLDSGTIFSATSLIKILQEPIWGFPQALTSISQAMI 181
            +++LWSTP +++ L+F T ++LG  LD+GT+F+ T++ KILQEPI  FPQ++ S+SQAMI
Sbjct: 553  IIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMI 612

Query: 182  SLGRLDGYLMSKXXXXXXXXXXXXXXXSFAIEVKDGMFAWDDDDGEIVLKKLNLRIKKGE 361
            SLGRLD Y+MS+               + A+E+KDG F+WDD+D E  ++ +N  +KKGE
Sbjct: 613  SLGRLDAYMMSRELSEDTVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGE 672

Query: 362  LAAIVGTVGSRKSSLLASILGEMHKISGKVRVYGT 466
            LAAIVGTVGS KSSLLA++LGEMHK+SGKVRV G+
Sbjct: 673  LAAIVGTVGSGKSSLLAAVLGEMHKLSGKVRVCGS 707


>ref|XP_002880324.1| ATMRP4 [Arabidopsis lyrata subsp. lyrata] gi|297326163|gb|EFH56583.1|
            ATMRP4 [Arabidopsis lyrata subsp. lyrata]
          Length = 1525

 Score =  182 bits (463), Expect = 2e-44
 Identities = 88/155 (56%), Positives = 116/155 (74%)
 Frame = +2

Query: 2    VVLLWSTPAIVTTLSFGTTIWLGFPLDSGTIFSATSLIKILQEPIWGFPQALTSISQAMI 181
            +++LWSTP +++ L+F T + LG  LD+GT+F+ T++ KILQEPI  FPQ++ S+SQAMI
Sbjct: 557  IIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMI 616

Query: 182  SLGRLDGYLMSKXXXXXXXXXXXXXXXSFAIEVKDGMFAWDDDDGEIVLKKLNLRIKKGE 361
            SLGRLD Y+MSK               S A+EV+DG F+WDD+D E  L  +N ++KKGE
Sbjct: 617  SLGRLDSYMMSKELSGDAVERALGCDGSTAVEVRDGSFSWDDEDNEPALSDINFKVKKGE 676

Query: 362  LAAIVGTVGSRKSSLLASILGEMHKISGKVRVYGT 466
            L AIVGTVGS KSSLLAS+LGEMH+ISG+VRV G+
Sbjct: 677  LTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGS 711


>ref|XP_002523063.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
            gi|223537625|gb|EEF39248.1| multidrug
            resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
          Length = 1506

 Score =  182 bits (463), Expect = 2e-44
 Identities = 88/155 (56%), Positives = 114/155 (73%)
 Frame = +2

Query: 2    VVLLWSTPAIVTTLSFGTTIWLGFPLDSGTIFSATSLIKILQEPIWGFPQALTSISQAMI 181
            ++++W TP +++T++FGT +  G PLD+GT+F+ TS+ KILQ+PI  FPQ++ S SQAMI
Sbjct: 551  IIVMWCTPLLISTVTFGTALLFGVPLDAGTVFTTTSIFKILQDPIRSFPQSMISFSQAMI 610

Query: 182  SLGRLDGYLMSKXXXXXXXXXXXXXXXSFAIEVKDGMFAWDDDDGEIVLKKLNLRIKKGE 361
            SL RLD Y++SK                 A+E+KDG F+WDD+  + VLK +N  IKKGE
Sbjct: 611  SLERLDRYMLSKELVEQSVERVDGCDGRIAVEIKDGSFSWDDESEDEVLKNINFEIKKGE 670

Query: 362  LAAIVGTVGSRKSSLLASILGEMHKISGKVRVYGT 466
            L AIVGTVGS KSSLLAS+LGEMHKISGKVRV GT
Sbjct: 671  LTAIVGTVGSGKSSLLASVLGEMHKISGKVRVCGT 705


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