BLASTX nr result
ID: Coptis24_contig00026078
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026078
(735 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631291.1| PREDICTED: uncharacterized WD repeat-contain... 155 4e-75
emb|CAN76269.1| hypothetical protein VITISV_004097 [Vitis vinifera] 155 5e-75
ref|XP_003517744.1| PREDICTED: uncharacterized WD repeat-contain... 162 3e-73
ref|XP_002321562.1| predicted protein [Populus trichocarpa] gi|2... 150 1e-72
ref|XP_002520212.1| F-box and wd40 domain protein, putative [Ric... 163 3e-71
>ref|XP_003631291.1| PREDICTED: uncharacterized WD repeat-containing protein
alr3466-like [Vitis vinifera]
Length = 427
Score = 155 bits (391), Expect(2) = 4e-75
Identities = 72/106 (67%), Positives = 80/106 (75%)
Frame = +2
Query: 14 NYVQVRRHKKCTWVHHVDAVSALVFSRDDALLYSASWDRTFKIWRTSDFRCLESVXXXXX 193
NYVQVRRHKKCTWVHHVD +SAL S D +LLYSASWDRTFKIW+T+DFRCLES
Sbjct: 186 NYVQVRRHKKCTWVHHVDTISALALSEDGSLLYSASWDRTFKIWKTTDFRCLESAEKAHD 245
Query: 194 XXXXXXXVSNNGFVYTGSADNKIKVWNKAYGDKKHSLVDTLEKHRS 331
+S +G VYTGSAD KIKVW K G+KKH LV TLEKH+S
Sbjct: 246 DAINALVLSTDGIVYTGSADRKIKVWKKHEGEKKHRLVATLEKHKS 291
Score = 153 bits (386), Expect(2) = 4e-75
Identities = 77/105 (73%), Positives = 83/105 (79%)
Frame = +1
Query: 415 VNALALSSDGSILYSGACDRSIVVWEKXXXXXXXXXXXXXEAHMVVVGALRGHTKAVLCL 594
VNALALS DGS+LYSGACDRSI+VWEK HMVV GALRGHTKA+LCL
Sbjct: 293 VNALALSPDGSVLYSGACDRSIIVWEKDTSSSG--------GHMVVAGALRGHTKAILCL 344
Query: 595 AIVSDLVCSGSADKTVRIWRRGVGRCYSCLAVLEGHNGPVKCLTA 729
AIVSDLV SGSADKTVRIW++G+ R YSCLAV EGH GPVKCLTA
Sbjct: 345 AIVSDLVFSGSADKTVRIWKKGLQRSYSCLAVFEGHRGPVKCLTA 389
>emb|CAN76269.1| hypothetical protein VITISV_004097 [Vitis vinifera]
Length = 507
Score = 155 bits (391), Expect(2) = 5e-75
Identities = 72/106 (67%), Positives = 80/106 (75%)
Frame = +2
Query: 14 NYVQVRRHKKCTWVHHVDAVSALVFSRDDALLYSASWDRTFKIWRTSDFRCLESVXXXXX 193
NYVQVRRHKKCTWVHHVD +SAL S D +LLYSASWDRTFKIW+T+DFRCLES
Sbjct: 266 NYVQVRRHKKCTWVHHVDTISALALSEDGSLLYSASWDRTFKIWKTTDFRCLESAEKAHD 325
Query: 194 XXXXXXXVSNNGFVYTGSADNKIKVWNKAYGDKKHSLVDTLEKHRS 331
+S +G VYTGSAD KIKVW K G+KKH LV TLEKH+S
Sbjct: 326 DAINALVLSTDGIVYTGSADRKIKVWKKHEGEKKHRLVATLEKHKS 371
Score = 152 bits (385), Expect(2) = 5e-75
Identities = 76/105 (72%), Positives = 83/105 (79%)
Frame = +1
Query: 415 VNALALSSDGSILYSGACDRSIVVWEKXXXXXXXXXXXXXEAHMVVVGALRGHTKAVLCL 594
VNALALS DGS+LYSGACDRSI+VWEK HMVV GALRGHTKA+LCL
Sbjct: 373 VNALALSPDGSVLYSGACDRSIIVWEKDTSSSG--------GHMVVAGALRGHTKAILCL 424
Query: 595 AIVSDLVCSGSADKTVRIWRRGVGRCYSCLAVLEGHNGPVKCLTA 729
A+VSDLV SGSADKTVRIW++G+ R YSCLAV EGH GPVKCLTA
Sbjct: 425 AVVSDLVFSGSADKTVRIWKKGLQRSYSCLAVFEGHRGPVKCLTA 469
>ref|XP_003517744.1| PREDICTED: uncharacterized WD repeat-containing protein
alr3466-like [Glycine max]
Length = 433
Score = 162 bits (410), Expect(2) = 3e-73
Identities = 75/107 (70%), Positives = 85/107 (79%)
Frame = +2
Query: 11 KNYVQVRRHKKCTWVHHVDAVSALVFSRDDALLYSASWDRTFKIWRTSDFRCLESVXXXX 190
KNYV++RRHKK TWVHHVD VSAL SRD +LLYSASWDRTFKIWRTSDF+CLESV
Sbjct: 187 KNYVEIRRHKKRTWVHHVDTVSALALSRDGSLLYSASWDRTFKIWRTSDFKCLESVKNAH 246
Query: 191 XXXXXXXXVSNNGFVYTGSADNKIKVWNKAYGDKKHSLVDTLEKHRS 331
+SNNGFVYTGSAD +IK+W K G+KKHSL+ TLEKH+S
Sbjct: 247 EDAINSLVLSNNGFVYTGSADTRIKMWKKLEGEKKHSLIGTLEKHKS 293
Score = 139 bits (350), Expect(2) = 3e-73
Identities = 68/103 (66%), Positives = 78/103 (75%)
Frame = +1
Query: 415 VNALALSSDGSILYSGACDRSIVVWEKXXXXXXXXXXXXXEAHMVVVGALRGHTKAVLCL 594
VNALAL+SDGS+LYSGACDRSI+VWE MV+VGALRGHTKA+LCL
Sbjct: 295 VNALALNSDGSVLYSGACDRSILVWESDQNENNNT--------MVLVGALRGHTKAILCL 346
Query: 595 AIVSDLVCSGSADKTVRIWRRGVGRCYSCLAVLEGHNGPVKCL 723
+V+DLVCSGSAD +VR+WRRG + YSCLAV EGH PVKCL
Sbjct: 347 VVVADLVCSGSADNSVRVWRRGAEKSYSCLAVFEGHRRPVKCL 389
>ref|XP_002321562.1| predicted protein [Populus trichocarpa] gi|222868558|gb|EEF05689.1|
predicted protein [Populus trichocarpa]
Length = 346
Score = 150 bits (379), Expect(2) = 1e-72
Identities = 76/106 (71%), Positives = 87/106 (82%)
Frame = +1
Query: 412 GVNALALSSDGSILYSGACDRSIVVWEKXXXXXXXXXXXXXEAHMVVVGALRGHTKAVLC 591
G+NALALS+DGS+LYSGACDRSIVVWEK + +MVV+GALRGHT+++LC
Sbjct: 222 GINALALSTDGSVLYSGACDRSIVVWEKDD-----------DGNMVVLGALRGHTQSILC 270
Query: 592 LAIVSDLVCSGSADKTVRIWRRGVGRCYSCLAVLEGHNGPVKCLTA 729
LA+VSDLV SGSADKT+RIW RGV R YSCLAVLEGH GPVKCLTA
Sbjct: 271 LAVVSDLVFSGSADKTIRIW-RGVDRSYSCLAVLEGHGGPVKCLTA 315
Score = 149 bits (377), Expect(2) = 1e-72
Identities = 71/111 (63%), Positives = 81/111 (72%)
Frame = +2
Query: 2 LPPKNYVQVRRHKKCTWVHHVDAVSALVFSRDDALLYSASWDRTFKIWRTSDFRCLESVX 181
L P+N VQ+RRHK CTWVHHVD VSAL S D++ LYS SWDRT KIWRT+DF+CLESV
Sbjct: 112 LLPRNQVQIRRHKTCTWVHHVDTVSALALSSDESHLYSVSWDRTIKIWRTNDFKCLESVA 171
Query: 182 XXXXXXXXXXXVSNNGFVYTGSADNKIKVWNKAYGDKKHSLVDTLEKHRSG 334
+SN+G VYTGSAD KIKVW K+ + KHSLV TLEKH SG
Sbjct: 172 NAHDDAINAVALSNDGNVYTGSADKKIKVWRKSSEENKHSLVATLEKHMSG 222
>ref|XP_002520212.1| F-box and wd40 domain protein, putative [Ricinus communis]
gi|223540704|gb|EEF42267.1| F-box and wd40 domain
protein, putative [Ricinus communis]
Length = 431
Score = 163 bits (413), Expect(2) = 3e-71
Identities = 76/107 (71%), Positives = 85/107 (79%)
Frame = +2
Query: 11 KNYVQVRRHKKCTWVHHVDAVSALVFSRDDALLYSASWDRTFKIWRTSDFRCLESVXXXX 190
KNYVQVRRHKKCTWVHHVD VSAL S+D + L+SASWDRTFKIWRTSDFRCLESV
Sbjct: 182 KNYVQVRRHKKCTWVHHVDTVSALAVSKDGSFLFSASWDRTFKIWRTSDFRCLESVANAH 241
Query: 191 XXXXXXXXVSNNGFVYTGSADNKIKVWNKAYGDKKHSLVDTLEKHRS 331
+SN+GFVYTGSAD KIKVW K G+KKHSL+ T+EKH+S
Sbjct: 242 DDAINTLVLSNDGFVYTGSADKKIKVWKKQAGEKKHSLLATMEKHKS 288
Score = 131 bits (330), Expect(2) = 3e-71
Identities = 68/106 (64%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
Frame = +1
Query: 415 VNALALSSDGSILYSGACDRSIVVWEKXXXXXXXXXXXXXEAHMVVVGALRGHTKAVLCL 594
VNALALS+DGS+LYSGACDRSI+VWEK MVV GALRGH KA+LCL
Sbjct: 290 VNALALSADGSVLYSGACDRSILVWEKDANVG---------GEMVVAGALRGHNKAILCL 340
Query: 595 AIVSDLVCSGSADKTVRIWRR-GVGRC-YSCLAVLEGHNGPVKCLT 726
A+ +DL+CSGSAD T+RIWRR GV + YSCLAV EGH +KCLT
Sbjct: 341 AVAADLICSGSADSTIRIWRRSGVEKTNYSCLAVFEGHRKAIKCLT 386