BLASTX nr result
ID: Coptis24_contig00025968
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025968 (510 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 75 7e-12 dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 75 7e-12 dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 74 9e-12 gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 71 8e-11 gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 70 2e-10 >dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] Length = 1898 Score = 74.7 bits (182), Expect = 7e-12 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Frame = -1 Query: 456 SEWFLALFGATLWHIWLARNEVKFKGSKVDPSIYWKR--VMSMAXXXXXXXXXXXXXXXT 283 + W L +F LW++W ARN + F + PS R + S Sbjct: 1669 TNWSL-IFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAFQ 1727 Query: 282 LYIRWWPPPGNWFKLNAYGSAMGNPGAAGAGCLLRDTNGSFIFGIATPILHATCNIAEFW 103 ++ W PP + KLN+ G+ + A AG LLR+ NG ++ G I A +AE W Sbjct: 1728 TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELW 1787 Query: 102 GLLLGLRVLKAMGLTRVILETDSRVLFLAITED 4 GL GL + K G T++I ETDS + + +D Sbjct: 1788 GLREGLLLAKNRGFTKLIAETDSEAVVQVLRKD 1820 >dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] Length = 1366 Score = 74.7 bits (182), Expect = 7e-12 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Frame = -1 Query: 456 SEWFLALFGATLWHIWLARNEVKFKGSKVDPSIYWKR--VMSMAXXXXXXXXXXXXXXXT 283 + W L +F LW++W ARN + F + PS R + S Sbjct: 1137 TNWSL-IFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAFQ 1195 Query: 282 LYIRWWPPPGNWFKLNAYGSAMGNPGAAGAGCLLRDTNGSFIFGIATPILHATCNIAEFW 103 ++ W PP + KLN+ G+ + A AG LLR+ NG ++ G I A +AE W Sbjct: 1196 TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELW 1255 Query: 102 GLLLGLRVLKAMGLTRVILETDSRVLFLAITED 4 GL GL + K G T++I ETDS + + +D Sbjct: 1256 GLREGLLLAKNRGFTKLIAETDSEAVVQVLRKD 1288 >dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] Length = 1366 Score = 74.3 bits (181), Expect = 9e-12 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Frame = -1 Query: 456 SEWFLALFGATLWHIWLARNEVKFKGSKVDPSIYWKR--VMSMAXXXXXXXXXXXXXXXT 283 + W L +F LW++W ARN + F + PS R + S Sbjct: 1137 TNWSL-IFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRTGLQTAFQ 1195 Query: 282 LYIRWWPPPGNWFKLNAYGSAMGNPGAAGAGCLLRDTNGSFIFGIATPILHATCNIAEFW 103 ++ W PP + KLN+ G+ + A AG LLR+ NG ++ G I A +AE W Sbjct: 1196 TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYICNIGTANSFLAELW 1255 Query: 102 GLLLGLRVLKAMGLTRVILETDSRVLFLAITED 4 GL GL + K G T++I ETDS + + +D Sbjct: 1256 GLREGLLLAKNRGFTKLIAETDSEAVVQVLRKD 1288 >gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 321 Score = 71.2 bits (173), Expect = 8e-11 Identities = 36/84 (42%), Positives = 49/84 (58%) Frame = -1 Query: 276 IRWWPPPGNWFKLNAYGSAMGNPGAAGAGCLLRDTNGSFIFGIATPILHATCNIAEFWGL 97 + W P W KLN G++ GNPG A AG +LRD NG++I G A I + +AE WG+ Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210 Query: 96 LLGLRVLKAMGLTRVILETDSRVL 25 GL + G RV LE DS+++ Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMV 234 >gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] Length = 729 Score = 69.7 bits (169), Expect = 2e-10 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Frame = -1 Query: 435 FGATLWHIWLARNEVKFK---GSKVDPSIYWKRVMSMAXXXXXXXXXXXXXXXTLYIRWW 265 F T W++W RN+ F+ +P++ ++ T+YI W Sbjct: 570 FMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQKFTREIEDNTKLVHKSSHQKETIYIGWM 629 Query: 264 PPPGNWFKLNAYGSAMGNPGAAGAGCLLRDTNGSFIFGIATPILHATCNIAEFWGLLLGL 85 PP W KLN G+ G+ AG G LLRD++G +I G I AE WG+ LGL Sbjct: 630 RPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGL 689 Query: 84 RVLKAMGLTRVILETDSRVLFL 19 + T +I+E+DS++L L Sbjct: 690 DMAWRENTTHLIVESDSKILSL 711