BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025961
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003636929.1| Ribulose bisphosphate carboxylase small chai...   138   4e-31
sp|O65194.1|RBS_MEDSA RecName: Full=Ribulose bisphosphate carbox...   137   1e-30
ref|XP_003636956.1| Ribulose bisphosphate carboxylase small chai...   137   1e-30
ref|XP_003637843.1| Ribulose bisphosphate carboxylase small chai...   136   2e-30
ref|XP_003637842.1| Ribulose bisphosphate carboxylase small chai...   136   2e-30

>ref|XP_003636929.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
           truncatula] gi|355502864|gb|AES84067.1| Ribulose
           bisphosphate carboxylase small chain 3A [Medicago
           truncatula]
          Length = 613

 Score =  138 bits (348), Expect = 4e-31
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 2/86 (2%)
 Frame = +2

Query: 17  ASMISSTAVTTVNRASPAQ--AVAPFTGLKSMAGFPVTKKNNDITSIASNGSRVNCMQVW 190
           +SMISS+A+TTVNRASP Q  AVAPF GLKSMAGFP+TK N DITSI SNG RVNCMQVW
Sbjct: 3   SSMISSSAITTVNRASPVQSGAVAPFVGLKSMAGFPITKVNKDITSITSNGGRVNCMQVW 62

Query: 191 PTQGKKKFETLSYLPPLTPEQLAREV 268
           P  GKKKFETLSYLPPLT EQLA+EV
Sbjct: 63  PPIGKKKFETLSYLPPLTREQLAKEV 88


>sp|O65194.1|RBS_MEDSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|3044116|gb|AAC13293.1|
           ribulose-1,5-bisphosphate carboxylase small subunit
           [Medicago sativa]
          Length = 180

 Score =  137 bits (344), Expect = 1e-30
 Identities = 73/86 (84%), Positives = 76/86 (88%), Gaps = 3/86 (3%)
 Frame = +2

Query: 20  SMISSTAVTTVNRASPAQA--VAPFTGLKSMAGFPVTKK-NNDITSIASNGSRVNCMQVW 190
           ++ISS AVTTVNRAS AQA  VAPFTGLKS AGFPVTKK NNDITSIASNG RVNCMQVW
Sbjct: 2   ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVW 61

Query: 191 PTQGKKKFETLSYLPPLTPEQLAREV 268
           P  GKKKFETLSYLPPLT EQLA+EV
Sbjct: 62  PPVGKKKFETLSYLPPLTEEQLAKEV 87


>ref|XP_003636956.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
           truncatula] gi|355502891|gb|AES84094.1| Ribulose
           bisphosphate carboxylase small chain 3A [Medicago
           truncatula]
          Length = 175

 Score =  137 bits (344), Expect = 1e-30
 Identities = 71/91 (78%), Positives = 77/91 (84%), Gaps = 2/91 (2%)
 Frame = +2

Query: 2   KKEEMASMISSTAVTTVNRASPAQ--AVAPFTGLKSMAGFPVTKKNNDITSIASNGSRVN 175
           +K+  +SMISS+A+TTVNRAS  Q  AVAPF GLKSMAGFPVTK N DITSI SNG RVN
Sbjct: 67  RKKMASSMISSSAMTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVN 126

Query: 176 CMQVWPTQGKKKFETLSYLPPLTPEQLAREV 268
           CMQVWP  GKKKFETLSYLPPLT EQLA+EV
Sbjct: 127 CMQVWPPIGKKKFETLSYLPPLTREQLAKEV 157



 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/67 (77%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
 Frame = +2

Query: 17  ASMISSTAVTTVNRASPAQ--AVAPFTGLKSMAGFPVTKKNNDITSIASNGSRVNCMQVW 190
           +SM+SS+AVTTVNRAS  Q  AVAPF GLKSMAGFPVTK N DITSI SNG RVNCMQVW
Sbjct: 3   SSMMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVW 62

Query: 191 PTQGKKK 211
           P  G+KK
Sbjct: 63  PPIGRKK 69


>ref|XP_003637843.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
           truncatula] gi|355503778|gb|AES84981.1| Ribulose
           bisphosphate carboxylase small chain 3A [Medicago
           truncatula]
          Length = 181

 Score =  136 bits (342), Expect = 2e-30
 Identities = 71/86 (82%), Positives = 74/86 (86%), Gaps = 2/86 (2%)
 Frame = +2

Query: 17  ASMISSTAVTTVNRASPAQ--AVAPFTGLKSMAGFPVTKKNNDITSIASNGSRVNCMQVW 190
           +SMISS+AVTTVNRAS  Q  AVAPF GLKSMAGFPVTK N DITSI SNG RVNCMQVW
Sbjct: 3   SSMISSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVW 62

Query: 191 PTQGKKKFETLSYLPPLTPEQLAREV 268
           P  GKKKFETLSYLPPLT EQLA+EV
Sbjct: 63  PPIGKKKFETLSYLPPLTREQLAKEV 88


>ref|XP_003637842.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
           truncatula] gi|355503777|gb|AES84980.1| Ribulose
           bisphosphate carboxylase small chain 3A [Medicago
           truncatula]
          Length = 106

 Score =  136 bits (342), Expect = 2e-30
 Identities = 71/86 (82%), Positives = 74/86 (86%), Gaps = 2/86 (2%)
 Frame = +2

Query: 17  ASMISSTAVTTVNRASPAQ--AVAPFTGLKSMAGFPVTKKNNDITSIASNGSRVNCMQVW 190
           +SMISS+AVTTVNRAS  Q  AVAPF GLKSMAGFPVTK N DITSI SNG RVNCMQVW
Sbjct: 3   SSMISSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVW 62

Query: 191 PTQGKKKFETLSYLPPLTPEQLAREV 268
           P  GKKKFETLSYLPPLT EQLA+EV
Sbjct: 63  PPIGKKKFETLSYLPPLTREQLAKEV 88