BLASTX nr result
ID: Coptis24_contig00025943
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025943 (272 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002522354.1| pentatricopeptide repeat-containing protein,... 103 1e-20 ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ... 100 2e-19 ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi... 99 5e-19 gb|AEV41041.1| putative pentatricopeptide [Oryza minuta] 93 2e-17 gb|AFW59852.1| putative pentatricopeptide repeat family protein ... 92 4e-17 >ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 704 Score = 103 bits (257), Expect = 1e-20 Identities = 47/83 (56%), Positives = 65/83 (78%) Frame = -3 Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91 ED+AT ++LSNLYA WD V E+R+K+R +MLEKDPG+SWI+ ++IHVF+SDDQS+P Sbjct: 615 EDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIEAKNDIHVFSSDDQSNP 674 Query: 90 QLVDAQFELQRLSGNMIKSEAPE 22 + +AQ E++RL NMI+S E Sbjct: 675 VIDEAQAEVRRLQRNMIRSVTDE 697 >ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513169|gb|AES94792.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 985 Score = 99.8 bits (247), Expect = 2e-19 Identities = 44/80 (55%), Positives = 61/80 (76%) Frame = -3 Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91 ED TL++LSNLYA WD V E+RR ++ +++EK+PGLSWI+ ++IHVF+S DQSHP Sbjct: 890 EDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSWIEAKNDIHVFSSGDQSHP 949 Query: 90 QLVDAQFELQRLSGNMIKSE 31 ++ Q EL RL GNMI++E Sbjct: 950 KVDQVQAELHRLKGNMIRTE 969 >ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Glycine max] Length = 715 Score = 98.6 bits (244), Expect = 5e-19 Identities = 46/80 (57%), Positives = 60/80 (75%) Frame = -3 Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91 ED TLV+LSNLYA R+WD V E+RR +R +ML+K PGLSWI+ ++IHVF+S DQSHP Sbjct: 620 EDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWIEAKNDIHVFSSGDQSHP 679 Query: 90 QLVDAQFELQRLSGNMIKSE 31 + + EL RL NMI++E Sbjct: 680 KADEVHAELHRLKRNMIRTE 699 >gb|AEV41041.1| putative pentatricopeptide [Oryza minuta] Length = 724 Score = 93.2 bits (230), Expect = 2e-17 Identities = 39/76 (51%), Positives = 59/76 (77%) Frame = -3 Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91 +D +T ++LSNLYA L +WD V E+R+K+R +M+EK+PGLSW+++ + +HVF++DD+ H Sbjct: 635 DDISTHILLSNLYASLGKWDVVAEIRKKMRGLMVEKEPGLSWVEMKNVVHVFSADDECHS 694 Query: 90 QLVDAQFELQRLSGNM 43 Q+ D EL RL GNM Sbjct: 695 QIDDCHGELLRLKGNM 710 >gb|AFW59852.1| putative pentatricopeptide repeat family protein [Zea mays] Length = 554 Score = 92.0 bits (227), Expect = 4e-17 Identities = 39/83 (46%), Positives = 63/83 (75%) Frame = -3 Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91 +D +T ++LSNLYA + +WD+V E+RRK+R +M+EK+PGLSWI+I +HVF++DD+ H Sbjct: 465 DDLSTHILLSNLYASIGKWDSVSEIRRKIRGLMIEKEPGLSWIEIEKMVHVFSADDECHT 524 Query: 90 QLVDAQFELQRLSGNMIKSEAPE 22 ++ D + EL R+ NM+ ++ E Sbjct: 525 RIDDCRDELLRIMENMVLLDSYE 547