BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025943
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522354.1| pentatricopeptide repeat-containing protein,...   103   1e-20
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ...   100   2e-19
ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
gb|AEV41041.1| putative pentatricopeptide [Oryza minuta]               93   2e-17
gb|AFW59852.1| putative pentatricopeptide repeat family protein ...    92   4e-17

>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 704

 Score =  103 bits (257), Expect = 1e-20
 Identities = 47/83 (56%), Positives = 65/83 (78%)
 Frame = -3

Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91
           ED+AT ++LSNLYA    WD V E+R+K+R +MLEKDPG+SWI+  ++IHVF+SDDQS+P
Sbjct: 615 EDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIEAKNDIHVFSSDDQSNP 674

Query: 90  QLVDAQFELQRLSGNMIKSEAPE 22
            + +AQ E++RL  NMI+S   E
Sbjct: 675 VIDEAQAEVRRLQRNMIRSVTDE 697


>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355513169|gb|AES94792.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 985

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 44/80 (55%), Positives = 61/80 (76%)
 Frame = -3

Query: 270  EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91
            ED  TL++LSNLYA    WD V E+RR ++ +++EK+PGLSWI+  ++IHVF+S DQSHP
Sbjct: 890  EDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSWIEAKNDIHVFSSGDQSHP 949

Query: 90   QLVDAQFELQRLSGNMIKSE 31
            ++   Q EL RL GNMI++E
Sbjct: 950  KVDQVQAELHRLKGNMIRTE 969


>ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = -3

Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91
           ED  TLV+LSNLYA  R+WD V E+RR +R +ML+K PGLSWI+  ++IHVF+S DQSHP
Sbjct: 620 EDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWIEAKNDIHVFSSGDQSHP 679

Query: 90  QLVDAQFELQRLSGNMIKSE 31
           +  +   EL RL  NMI++E
Sbjct: 680 KADEVHAELHRLKRNMIRTE 699


>gb|AEV41041.1| putative pentatricopeptide [Oryza minuta]
          Length = 724

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 59/76 (77%)
 Frame = -3

Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91
           +D +T ++LSNLYA L +WD V E+R+K+R +M+EK+PGLSW+++ + +HVF++DD+ H 
Sbjct: 635 DDISTHILLSNLYASLGKWDVVAEIRKKMRGLMVEKEPGLSWVEMKNVVHVFSADDECHS 694

Query: 90  QLVDAQFELQRLSGNM 43
           Q+ D   EL RL GNM
Sbjct: 695 QIDDCHGELLRLKGNM 710


>gb|AFW59852.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 554

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 39/83 (46%), Positives = 63/83 (75%)
 Frame = -3

Query: 270 EDTATLVMLSNLYAGLREWDAVREMRRKVRSMMLEKDPGLSWIDIMSEIHVFASDDQSHP 91
           +D +T ++LSNLYA + +WD+V E+RRK+R +M+EK+PGLSWI+I   +HVF++DD+ H 
Sbjct: 465 DDLSTHILLSNLYASIGKWDSVSEIRRKIRGLMIEKEPGLSWIEIEKMVHVFSADDECHT 524

Query: 90  QLVDAQFELQRLSGNMIKSEAPE 22
           ++ D + EL R+  NM+  ++ E
Sbjct: 525 RIDDCRDELLRIMENMVLLDSYE 547