BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025910
         (936 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...   124   3e-26
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    96   9e-18
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    96   1e-17
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    96   1e-17
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    96   2e-17

>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score =  124 bits (311), Expect = 3e-26
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 12/293 (4%)
 Frame = -3

Query: 862 GMYSSKSAYNALRIPREKVMWYNMVWGKLVVPKHSFSSWQLMSGSLPTQDRLIKKNVLKE 683
           G  +++ AY  +      V+W   +W   + P  SF +W+L+   LPT + L K+  L  
Sbjct: 16  GDLTNQLAYKFINETGNHVLWDKFLWNSYIPPSRSFITWRLLHNKLPTDENLRKRGCLIV 75

Query: 682 SKCCFCHNARENSKHLFSECSFTNAVW----KGIKNLLGLRIQGDSKREWRILMKLCTRN 515
           S CCFC  + E+S+H+F EC  T+ +W    KG   LL          +    ++L  RN
Sbjct: 76  SICCFCMKSAESSQHIFFECHVTSRLWDWLGKGTDKLL----------DCSSCLQLLIRN 125

Query: 514 -----DIKAEILKTFVCATVDHIWKERNARRFRNTNLSCTVVLSNLISEMKTYLQSQISE 350
                 +   IL + +  T+  IW ERN R F N + + T + + +++E+K      + +
Sbjct: 126 WGSGSKLVNNILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIK 185

Query: 349 IEDTMRERILIERLGLQAKYKRKEP-IPCLWIKPPENVVKLNADGSMIDER-CSAAG-VI 179
               M++  + +   +  K KR  P +  +W  P  ++VK+N DGS +    C + G VI
Sbjct: 186 GNSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVI 245

Query: 178 RDSEGEVLLAYTNEGGLRSVLYQELKGILLGLQGRQKINKSEIIVATDSLRAV 20
           RDS    L A ++  G  + L  E    ++ ++  Q++    + + TDSL+ V
Sbjct: 246 RDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVV 298


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 96.3 bits (238), Expect = 9e-18
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
 Frame = -3

Query: 898 QEDRVVRTLEPDGMYSSKSAYNALRIPREKVMWYNMVWGKLVVPKHSFSSWQLMSGSLPT 719
           Q+D +V    P+  +S K A+  LR  R+ V W+++VW K  VP+HSF  W  +   L T
Sbjct: 310 QKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTT 369

Query: 718 QDRLIKKNVLKESKCCFCHNARENSKHLFSECSFTNAVWKGIKNLLGLRIQGDSKREWRI 539
           QD+L +  +   ++C  C    E+  HLF ECS+T A+W  + +   +        EW  
Sbjct: 370 QDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIR 429

Query: 538 LMKLCTRNDIKAEI-LKTFVCATVDHIWKERNARRFRNTNLSCTVVLSNL 392
              +            K    ATV H+W+ERNAR F   + +  +VL+ +
Sbjct: 430 WATVSWHGKSFVNFSCKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQI 479


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 95.9 bits (237), Expect = 1e-17
 Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 5/297 (1%)
 Frame = -3

Query: 892 DRVVRTLEPDGMYSSKSAYNALRIPREKVMWYNMVWGKLVVPKHSFSSWQLMSGSLPTQD 713
           D+++ T   DG  S+K A++ L      V W  M+W     P  +F +W+ +   LPT D
Sbjct: 41  DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDD 100

Query: 712 RLIKKN-VLKESKCCFCHNARENSKHLFSECSFTNAVWKGIKNLLGLRIQGDSKREWRIL 536
            L K+   +    CCFC    E S H+F +C  T  +W  +       +   S       
Sbjct: 101 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSS------- 153

Query: 535 MKLCTRNDIKAEILKTFVCATVDHIWKERNARRFRNTNLSCTVVLSNLISE-MKTYLQSQ 359
             +   + +   ++ + +   +  IW E N + F       + + + +++E ++      
Sbjct: 154 --ILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLD 211

Query: 358 ISEIEDTMRERILIERLGLQAKYKRKEPI-PCLWIKPPENVVKLNADGSMI-DERCSAAG 185
           I +   +M++  L     +  K  R  P    +W+ P    +K+N DGS++    C + G
Sbjct: 212 IVKGASSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIG 271

Query: 184 VI-RDSEGEVLLAYTNEGGLRSVLYQELKGILLGLQGRQKINKSEIIVATDSLRAVR 17
           VI R S+     A+    G  + L  E    +  ++  ++++ + I + TDS+  +R
Sbjct: 272 VIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 328


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 95.9 bits (237), Expect = 1e-17
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
 Frame = -3

Query: 898 QEDRVVRTLEPDGMYSSKSAYNALRIPREKVMWYNMVWGKLVVPKHSFSSWQLMSGSLPT 719
           Q+D +V    P+  +S K A+  LR  R  V W+++VW K  VP+HSF  W ++   L T
Sbjct: 128 QKDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRHSFLLWMVVQQKLTT 187

Query: 718 QDRLIKKNVLKESKCCFCHNARENSKHLFSECSFTNAVWKGIKNLLGLRIQGDSKREWRI 539
           QD+L +  +   ++C  C    E+  HLF ECS+T A+W  + +   +        EW  
Sbjct: 188 QDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIR 247

Query: 538 LMKLCTRNDIKAEI-LKTFVCATVDHIWKERNARRFRNTNLSCTVVLSNL 392
              +            K    ATV H+W+ERNAR F   + +  +V + +
Sbjct: 248 WATVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGLSRTSNLVFNQI 297


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
 Frame = -3

Query: 898  QEDRVVRTLEPDGMYSSKSAYNALRIPREKVMWYNMVWGKLVVPKHSFSSWQLMSGSLPT 719
            Q+D ++    P+  +S K A+  LR  R+ V W+++VW K  VP+HSF  W ++   L T
Sbjct: 843  QKDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRHSFLLWMVVQQKLTT 902

Query: 718  QDRLIKKNVLKESKCCFCHNARENSKHLFSECSFTNAVWKGIKNLLGLRIQGDSKREWRI 539
            QD+L +  +   ++C  C    E+  HLF ECS+T A+W  + +   +        EW  
Sbjct: 903  QDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIR 962

Query: 538  LMKLCTRNDIKAEI-LKTFVCATVDHIWKERNARRFRNTNLSCTVVLSNL 392
               +            K    ATV H+W+ERNAR F   + +  +V + +
Sbjct: 963  WATVSWHGKSFINFSRKLSFAATVYHVWQERNARIFAGLSRTSNLVFNQI 1012