BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025905
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [S...   150   1e-34
ref|XP_002299838.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-34
ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group] g...   149   3e-34
ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I an...   148   4e-34
gb|ABW81101.1| RNApol24 [Cleome spinosa]                              147   7e-34

>ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
           gi|241943672|gb|EES16817.1| hypothetical protein
           SORBIDRAFT_08g005640 [Sorghum bicolor]
          Length = 108

 Score =  150 bits (378), Expect = 1e-34
 Identities = 71/103 (68%), Positives = 82/103 (79%)
 Frame = +3

Query: 9   MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188
           MEHGS++D  S+TFS+ +EDHTLANSVRF LNQDPRV FCGYSIPHP + KVNIRVQTTG
Sbjct: 1   MEHGSLDDSSSSTFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTTG 60

Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDI 317
           DPAK+V  DALQDL+ MC H+R T D AV   R + +  AMDI
Sbjct: 61  DPAKDVLKDALQDLMVMCQHIRGTLDTAVADFRGNKTAEAMDI 103


>ref|XP_002299838.1| predicted protein [Populus trichocarpa] gi|222847096|gb|EEE84643.1|
           predicted protein [Populus trichocarpa]
          Length = 102

 Score =  149 bits (376), Expect = 2e-34
 Identities = 70/95 (73%), Positives = 78/95 (82%)
 Frame = +3

Query: 9   MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188
           MEHGS+ D  SATF   DEDHTLANSVRF LNQDPRV+FCGYSIPHP+DAKVNIRVQTTG
Sbjct: 1   MEHGSVRDPSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTG 60

Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKS 293
           DPA+EV  DA Q+L+ MC HVR T D+AVD  R +
Sbjct: 61  DPAREVLKDACQNLMVMCQHVRSTLDKAVDDYRSN 95


>ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group]
           gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11
           dimerisation domain containing protein, expressed [Oryza
           sativa Japonica Group] gi|113648858|dbj|BAF29370.1|
           Os12g0194700 [Oryza sativa Japonica Group]
           gi|125578768|gb|EAZ19914.1| hypothetical protein
           OsJ_35508 [Oryza sativa Japonica Group]
           gi|215768489|dbj|BAH00718.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218186562|gb|EEC68989.1| hypothetical protein
           OsI_37758 [Oryza sativa Indica Group]
          Length = 108

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/96 (71%), Positives = 80/96 (83%)
 Frame = +3

Query: 9   MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188
           MEHGS+ D  ++TFS+ +EDHTLANSVRF LNQDPRV FCGYSIPHP D KVNIRVQTTG
Sbjct: 1   MEHGSVTDSTASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60

Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSN 296
           DPAK+V  D+LQDL+ MC HVR TFD AV + R++N
Sbjct: 61  DPAKDVLKDSLQDLMVMCQHVRGTFDTAVTQFRQNN 96


>ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
           isoform 1 [Vitis vinifera] gi|297745971|emb|CBI16027.3|
           unnamed protein product [Vitis vinifera]
          Length = 105

 Score =  148 bits (374), Expect = 4e-34
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +3

Query: 9   MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188
           MEHGS +D   +TFSL+DEDHTLANS+RFTLNQDPRV FCGYSIPHP+DA+VNIRVQTTG
Sbjct: 1   MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60

Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDIK 320
           D A+EV  DA QDL+ MC HVR TFD+AV   + S     M I+
Sbjct: 61  DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104


>gb|ABW81101.1| RNApol24 [Cleome spinosa]
          Length = 109

 Score =  147 bits (372), Expect = 7e-34
 Identities = 71/105 (67%), Positives = 80/105 (76%)
 Frame = +3

Query: 9   MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188
           MEHGS  D   ATFSL +EDHTLAN+VRF LNQDPRVTFCGYSIPHP+ A+VNIRVQTTG
Sbjct: 1   MEHGSFTDHSHATFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTTG 60

Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDIKP 323
           DPA+EV  DA QDL+ M  HVR  FD AV   +K N   +MD+ P
Sbjct: 61  DPAREVLKDACQDLMLMNRHVRGVFDNAVADFKKGNQTESMDVGP 105