BLASTX nr result
ID: Coptis24_contig00025905
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025905 (443 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [S... 150 1e-34 ref|XP_002299838.1| predicted protein [Populus trichocarpa] gi|2... 149 2e-34 ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group] g... 149 3e-34 ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I an... 148 4e-34 gb|ABW81101.1| RNApol24 [Cleome spinosa] 147 7e-34 >ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor] gi|241943672|gb|EES16817.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor] Length = 108 Score = 150 bits (378), Expect = 1e-34 Identities = 71/103 (68%), Positives = 82/103 (79%) Frame = +3 Query: 9 MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188 MEHGS++D S+TFS+ +EDHTLANSVRF LNQDPRV FCGYSIPHP + KVNIRVQTTG Sbjct: 1 MEHGSLDDSSSSTFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTTG 60 Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDI 317 DPAK+V DALQDL+ MC H+R T D AV R + + AMDI Sbjct: 61 DPAKDVLKDALQDLMVMCQHIRGTLDTAVADFRGNKTAEAMDI 103 >ref|XP_002299838.1| predicted protein [Populus trichocarpa] gi|222847096|gb|EEE84643.1| predicted protein [Populus trichocarpa] Length = 102 Score = 149 bits (376), Expect = 2e-34 Identities = 70/95 (73%), Positives = 78/95 (82%) Frame = +3 Query: 9 MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188 MEHGS+ D SATF DEDHTLANSVRF LNQDPRV+FCGYSIPHP+DAKVNIRVQTTG Sbjct: 1 MEHGSVRDPSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTG 60 Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKS 293 DPA+EV DA Q+L+ MC HVR T D+AVD R + Sbjct: 61 DPAREVLKDACQNLMVMCQHVRSTLDKAVDDYRSN 95 >ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group] gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed [Oryza sativa Japonica Group] gi|113648858|dbj|BAF29370.1| Os12g0194700 [Oryza sativa Japonica Group] gi|125578768|gb|EAZ19914.1| hypothetical protein OsJ_35508 [Oryza sativa Japonica Group] gi|215768489|dbj|BAH00718.1| unnamed protein product [Oryza sativa Japonica Group] gi|218186562|gb|EEC68989.1| hypothetical protein OsI_37758 [Oryza sativa Indica Group] Length = 108 Score = 149 bits (375), Expect = 3e-34 Identities = 69/96 (71%), Positives = 80/96 (83%) Frame = +3 Query: 9 MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188 MEHGS+ D ++TFS+ +EDHTLANSVRF LNQDPRV FCGYSIPHP D KVNIRVQTTG Sbjct: 1 MEHGSVTDSTASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60 Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSN 296 DPAK+V D+LQDL+ MC HVR TFD AV + R++N Sbjct: 61 DPAKDVLKDSLQDLMVMCQHVRGTFDTAVTQFRQNN 96 >ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1 [Vitis vinifera] gi|297745971|emb|CBI16027.3| unnamed protein product [Vitis vinifera] Length = 105 Score = 148 bits (374), Expect = 4e-34 Identities = 71/104 (68%), Positives = 82/104 (78%) Frame = +3 Query: 9 MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188 MEHGS +D +TFSL+DEDHTLANS+RFTLNQDPRV FCGYSIPHP+DA+VNIRVQTTG Sbjct: 1 MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60 Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDIK 320 D A+EV DA QDL+ MC HVR TFD+AV + S M I+ Sbjct: 61 DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104 >gb|ABW81101.1| RNApol24 [Cleome spinosa] Length = 109 Score = 147 bits (372), Expect = 7e-34 Identities = 71/105 (67%), Positives = 80/105 (76%) Frame = +3 Query: 9 MEHGSINDVKSATFSLADEDHTLANSVRFTLNQDPRVTFCGYSIPHPTDAKVNIRVQTTG 188 MEHGS D ATFSL +EDHTLAN+VRF LNQDPRVTFCGYSIPHP+ A+VNIRVQTTG Sbjct: 1 MEHGSFTDHSHATFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTTG 60 Query: 189 DPAKEVFTDALQDLIFMCGHVRETFDEAVDKCRKSNSGNAMDIKP 323 DPA+EV DA QDL+ M HVR FD AV +K N +MD+ P Sbjct: 61 DPAREVLKDACQDLMLMNRHVRGVFDNAVADFKKGNQTESMDVGP 105