BLASTX nr result
ID: Coptis24_contig00025894
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025894
(262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containi... 71 1e-11
emb|CBI39592.3| unnamed protein product [Vitis vinifera] 71 1e-11
ref|XP_002338159.1| predicted protein [Populus trichocarpa] gi|2... 74 1e-11
ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|2... 71 3e-11
ref|XP_002531339.1| pentatricopeptide repeat-containing protein,... 70 3e-11
>ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 70.9 bits (172), Expect(2) = 1e-11
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG+ + ++ A L ++M+ + P+ T++I+I G C+ V A+K+F +MQ GL
Sbjct: 271 IDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL 330
Query: 200 RPDVVAYGALIGGLCNNG 253
+P+VV Y +LI GLC+NG
Sbjct: 331 QPNVVTYNSLINGLCSNG 348
Score = 23.5 bits (49), Expect(2) = 1e-11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 3 VIICNTLMDGYCR 41
VI NT++DGYC+
Sbjct: 264 VITYNTIIDGYCK 276
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/75 (42%), Positives = 46/75 (61%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG+ ++ A ++FE+M GL+P+ TY+ +I GLC GK+ A L M +GL
Sbjct: 306 IDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGL 365
Query: 200 RPDVVAYGALIGGLC 244
+P+VV Y ALI G C
Sbjct: 366 KPNVVTYNALINGFC 380
>emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 70.9 bits (172), Expect(2) = 1e-11
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG+ + ++ A L ++M+ + P+ T++I+I G C+ V A+K+F +MQ GL
Sbjct: 271 IDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL 330
Query: 200 RPDVVAYGALIGGLCNNG 253
+P+VV Y +LI GLC+NG
Sbjct: 331 QPNVVTYNSLINGLCSNG 348
Score = 23.5 bits (49), Expect(2) = 1e-11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 3 VIICNTLMDGYCR 41
VI NT++DGYC+
Sbjct: 264 VITYNTIIDGYCK 276
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/75 (42%), Positives = 46/75 (61%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG+ ++ A ++FE+M GL+P+ TY+ +I GLC GK+ A L M +GL
Sbjct: 306 IDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGL 365
Query: 200 RPDVVAYGALIGGLC 244
+P+VV Y ALI G C
Sbjct: 366 KPNVVTYNALINGFC 380
>ref|XP_002338159.1| predicted protein [Populus trichocarpa] gi|222871069|gb|EEF08200.1|
predicted protein [Populus trichocarpa]
Length = 368
Score = 73.9 bits (180), Expect = 1e-11
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
++G+ L A ++ A +LF+ MI G KPD F+Y+I+I G CK ++ A++LF++M GL
Sbjct: 157 MNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 216
Query: 200 RPDVVAYGALIGGLCNNG 253
PD+V+Y LI GLC G
Sbjct: 217 TPDIVSYNTLIDGLCQLG 234
Score = 65.1 bits (157), Expect = 6e-09
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
I+G+ + + A QLF +MIH GL PD +Y+ +I GLC++G++ A LF +M G
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 251
Query: 200 RPDVVAYGALIGGLCNNG 253
PD+ Y L+ G C G
Sbjct: 252 LPDLCTYSILLDGFCKQG 269
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG L A LF++M+ NG PD TYSI++ G CK G + A +LF MQ+ L
Sbjct: 227 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 286
Query: 200 RPDVVAYGALIGGLCNN 250
+P++V Y LI +C +
Sbjct: 287 KPNMVMYNILIDAMCKS 303
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 77 MIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGLRPDVVAYGALIGGLCNN 250
M+ G +PD TY+ +I GLCK+G+ V A LF M G +PDVV Y +I LC +
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKD 58
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/76 (40%), Positives = 42/76 (55%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
I+G A LF+ M G +PD TYS +I LCK +V A +FS M+A G+
Sbjct: 17 INGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGI 76
Query: 200 RPDVVAYGALIGGLCN 247
P++ Y +LI GLCN
Sbjct: 77 SPNIFTYNSLIQGLCN 92
>ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|222853877|gb|EEE91424.1|
predicted protein [Populus trichocarpa]
Length = 724
Score = 71.2 bits (173), Expect(2) = 3e-11
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
I+G+ + ++ A++ DMIH G PD TY+ +I GLCK G++ A LF +QA G+
Sbjct: 599 INGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGI 658
Query: 200 RPDVVAYGALIGGLCNNG 253
+PD + Y LI LC G
Sbjct: 659 QPDSITYNTLICWLCREG 676
Score = 21.6 bits (44), Expect(2) = 3e-11
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +3
Query: 3 VIICNTLMDGYC 38
+I CN L++G+C
Sbjct: 592 IITCNILINGFC 603
Score = 60.5 bits (145), Expect = 1e-07
Identities = 30/63 (47%), Positives = 36/63 (57%)
Frame = +2
Query: 65 LFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGLRPDVVAYGALIGGLC 244
LFE+MI GL P T +I+I G C GKV A + DM G PD+V Y +LI GLC
Sbjct: 579 LFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLC 638
Query: 245 NNG 253
G
Sbjct: 639 KRG 641
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 IDGWILSASLYGAMQ-LFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALG 196
++G++ + L A +++ MI+NG PD FT+S ++ GLCK G A +L +DM A G
Sbjct: 353 VNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412
Query: 197 LRPDVVAYGALIGGLCNNG 253
+P++ Y LI G C G
Sbjct: 413 CKPNLNTYTILIDGFCKKG 431
>ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529061|gb|EEF31046.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 630
Score = 70.1 bits (170), Expect(2) = 3e-11
Identities = 35/80 (43%), Positives = 45/80 (56%)
Frame = +2
Query: 20 IDGWILSASLYGAMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGL 199
IDG S + A QL + MI GLKPD FTY+ ++ C+ G + A + M + G
Sbjct: 391 IDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGC 450
Query: 200 RPDVVAYGALIGGLCNNGCV 259
PD+V YG LIGGLC G V
Sbjct: 451 EPDIVTYGTLIGGLCKAGRV 470
Score = 22.7 bits (47), Expect(2) = 3e-11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 3 VIICNTLMDGYCR 41
VI NTL+DG+C+
Sbjct: 349 VITYNTLIDGFCK 361
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +2
Query: 56 AMQLFEDMIHNGLKPDNFTYSIVIAGLCKVGKVVVAQKLFSDMQALGLRPDVVAYGALIG 235
A++L+ +M + G +PD FTY+++I LC GK+ A L +M+ G +V+ Y LI
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357
Query: 236 GLCNN 250
G C N
Sbjct: 358 GFCKN 362