BLASTX nr result
ID: Coptis24_contig00025892
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025892 (364 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002533114.1| pentatricopeptide repeat-containing protein,... 144 1e-32 ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|2... 143 2e-32 ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31 ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containi... 129 3e-28 emb|CBI22243.3| unnamed protein product [Vitis vinifera] 112 3e-23 >ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 480 Score = 144 bits (362), Expect = 1e-32 Identities = 68/104 (65%), Positives = 82/104 (78%) Frame = -1 Query: 313 QLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIPGTITYAQTLFEQIT 134 Q S+LW+NC N+ +LKQ+HA+LI+ GFNS+ YALRELIF SA+VIPGTI YA LF+Q+ Sbjct: 15 QPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQVA 74 Query: 133 EPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2 EPD FMWNT++RGS+QS P KAV LYTQME I D FTF F Sbjct: 75 EPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSF 118 >ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa] Length = 546 Score = 143 bits (360), Expect = 2e-32 Identities = 73/118 (61%), Positives = 84/118 (71%), Gaps = 4/118 (3%) Frame = -1 Query: 343 MIRKTIS----NCPQLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176 MIRK + N Q S+LWKNC N+ ALKQ+HA LI+ GFNSNR ALRELIF AM I Sbjct: 1 MIRKRTNDRSTNRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTIS 60 Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2 G I YA +F QITEPD FMWNT++RGS+QS P K VLLYTQME + + D FTF F Sbjct: 61 GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSF 118 >ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Vitis vinifera] Length = 550 Score = 138 bits (348), Expect = 4e-31 Identities = 68/118 (57%), Positives = 84/118 (71%), Gaps = 4/118 (3%) Frame = -1 Query: 343 MIRKTISNCP----QLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176 MIRK +++ Q S LW++C I LKQ+HA++IV GFNSN ALRELI+ S++ I Sbjct: 1 MIRKRLTDKSPSRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAIS 60 Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2 GT+ YA LF ITEPDTFMWNT+IRGSAQS P A+ LY+QME C+ D FTFPF Sbjct: 61 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPF 118 >ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Cucumis sativus] Length = 542 Score = 129 bits (323), Expect = 3e-28 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 4/118 (3%) Frame = -1 Query: 343 MIRKTIS----NCPQLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176 MIRK + N Q S+LW+ C N +LKQ+HA LIVNG NS LRELIF SA+V+ Sbjct: 1 MIRKRTNDNSFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVS 60 Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2 GT+ YA LF QI++PD FMWNT+IRGSAQ+ P AV LYTQME + + D FTF F Sbjct: 61 GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSF 118 >emb|CBI22243.3| unnamed protein product [Vitis vinifera] Length = 526 Score = 112 bits (280), Expect = 3e-23 Identities = 53/83 (63%), Positives = 62/83 (74%) Frame = -1 Query: 250 LIVNGFNSNRYALRELIFTSAMVIPGTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPC 71 +IV GFNSN ALRELI+ S++ I GT+ YA LF ITEPDTFMWNT+IRGSAQS P Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60 Query: 70 KAVLLYTQMEKKCIGADNFTFPF 2 A+ LY+QME C+ D FTFPF Sbjct: 61 NAISLYSQMENGCVRPDKFTFPF 83