BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025892
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533114.1| pentatricopeptide repeat-containing protein,...   144   1e-32
ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|2...   143   2e-32
ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containi...   138   4e-31
ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
emb|CBI22243.3| unnamed protein product [Vitis vinifera]              112   3e-23

>ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527077|gb|EEF29259.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score =  144 bits (362), Expect = 1e-32
 Identities = 68/104 (65%), Positives = 82/104 (78%)
 Frame = -1

Query: 313 QLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIPGTITYAQTLFEQIT 134
           Q S+LW+NC N+ +LKQ+HA+LI+ GFNS+ YALRELIF SA+VIPGTI YA  LF+Q+ 
Sbjct: 15  QPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQVA 74

Query: 133 EPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2
           EPD FMWNT++RGS+QS  P KAV LYTQME   I  D FTF F
Sbjct: 75  EPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSF 118


>ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|222867072|gb|EEF04203.1|
           predicted protein [Populus trichocarpa]
          Length = 546

 Score =  143 bits (360), Expect = 2e-32
 Identities = 73/118 (61%), Positives = 84/118 (71%), Gaps = 4/118 (3%)
 Frame = -1

Query: 343 MIRKTIS----NCPQLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176
           MIRK  +    N  Q S+LWKNC N+ ALKQ+HA LI+ GFNSNR ALRELIF  AM I 
Sbjct: 1   MIRKRTNDRSTNRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTIS 60

Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2
           G I YA  +F QITEPD FMWNT++RGS+QS  P K VLLYTQME + +  D FTF F
Sbjct: 61  GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSF 118


>ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  138 bits (348), Expect = 4e-31
 Identities = 68/118 (57%), Positives = 84/118 (71%), Gaps = 4/118 (3%)
 Frame = -1

Query: 343 MIRKTISNCP----QLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176
           MIRK +++      Q S LW++C  I  LKQ+HA++IV GFNSN  ALRELI+ S++ I 
Sbjct: 1   MIRKRLTDKSPSRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAIS 60

Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2
           GT+ YA  LF  ITEPDTFMWNT+IRGSAQS  P  A+ LY+QME  C+  D FTFPF
Sbjct: 61  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPF 118


>ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  129 bits (323), Expect = 3e-28
 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
 Frame = -1

Query: 343 MIRKTIS----NCPQLSTLWKNCANIHALKQVHANLIVNGFNSNRYALRELIFTSAMVIP 176
           MIRK  +    N  Q S+LW+ C N  +LKQ+HA LIVNG NS    LRELIF SA+V+ 
Sbjct: 1   MIRKRTNDNSFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVS 60

Query: 175 GTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPCKAVLLYTQMEKKCIGADNFTFPF 2
           GT+ YA  LF QI++PD FMWNT+IRGSAQ+  P  AV LYTQME + +  D FTF F
Sbjct: 61  GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSF 118


>emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  112 bits (280), Expect = 3e-23
 Identities = 53/83 (63%), Positives = 62/83 (74%)
 Frame = -1

Query: 250 LIVNGFNSNRYALRELIFTSAMVIPGTITYAQTLFEQITEPDTFMWNTIIRGSAQSSVPC 71
           +IV GFNSN  ALRELI+ S++ I GT+ YA  LF  ITEPDTFMWNT+IRGSAQS  P 
Sbjct: 1   MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60

Query: 70  KAVLLYTQMEKKCIGADNFTFPF 2
            A+ LY+QME  C+  D FTFPF
Sbjct: 61  NAISLYSQMENGCVRPDKFTFPF 83