BLASTX nr result
ID: Coptis24_contig00025873
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025873
(957 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 74 3e-17
ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group] g... 60 4e-16
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 67 7e-16
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib... 69 2e-14
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 3e-14
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 73.9 bits (180), Expect(2) = 3e-17
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Frame = +2
Query: 11 VGSGKDINIWTDSWIPEV----LHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLF 178
+G G+D IW D W+P + + + P KV +LI N R W +++LN LF
Sbjct: 935 IGDGRDTTIWGDPWVPSLERYSIAATEGVSEDDGP--QKVCELIS-NDR-WNVELLNTLF 990
Query: 179 DINASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAYQQLSLR-------YVTNVNHKT 337
S +I I + D+ ++KNGQ +V+SAY L N K
Sbjct: 991 QPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKL 1050
Query: 338 SIAFWRKDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCP 517
W+ + P+ LF+WK H+ + ++ D C C E HL+ C
Sbjct: 1051 WQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCD 1110
Query: 518 FTRTLWFSTPWNLRLIDFENLQVKEWID 601
+ W+ +P + + E + W++
Sbjct: 1111 ESSRAWYISPLRIHTGNIEAGSFRIWVE 1138
Score = 41.2 bits (95), Expect(2) = 3e-17
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +3
Query: 624 IDKH---DWTSFCIYINWIIWLEQYRVLHDKSKPNWTHVYN-LVQGFVNALEVGLDFNLV 791
+D H +W + I W IWL + + + +K K + V V+G + E + V
Sbjct: 1141 LDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEEECAHTSPV 1200
Query: 792 NFQPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFIAA 941
W P +G VKLN+D + ++ IG+G V+RD+ G + A
Sbjct: 1201 ETLNTHENGWSVPPVGMVKLNVDAAVFKHV--GIGMGGVVRDAEGDVLLA 1248
>ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group]
gi|255677791|dbj|BAH93942.1| Os07g0501200 [Oryza sativa
Japonica Group]
Length = 620
Score = 60.5 bits (145), Expect(2) = 4e-16
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 8/188 (4%)
Frame = +2
Query: 2 MWQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFD 181
+W+VG+G I IW D W+P PI N V DL++ N W ++ + F+
Sbjct: 164 IWRVGNGHSIRIWRDPWLPRDFSRR-PITRKGNCRIKWVPDLLNDNGE-WDLERIQQHFN 221
Query: 182 INASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAYQ-QLSLRYVTNVN----HKTSIA 346
+ I I R+ D + K+G SV+SAY +SL V + + H S A
Sbjct: 222 QIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGHDLSKA 281
Query: 347 F---WRKDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCP 517
+ W ++ + +FAWK + + T + T C +C E V H L CP
Sbjct: 282 WKLVWNCNIPQKVKIFAWKAATNSLATLQNKKTRRLEPMAICSICGREEEDVAHALCRCP 341
Query: 518 FTRTLWFS 541
LW S
Sbjct: 342 HATNLWLS 349
Score = 50.8 bits (120), Expect(2) = 4e-16
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Frame = +3
Query: 624 IDKHDWTSFCIYINWIIWLEQYRVLHDKSKPNWTHVYNLVQGFVNALEVGLDFNLVNF-- 797
I K + F + + W IW + + H KS P + + + +V++L F +F
Sbjct: 377 IAKEEGAMFLMLL-WRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFPRADFAK 435
Query: 798 ------------------QPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSN 923
P L W+ P GW+KLN+D SF S GIG VLR+S
Sbjct: 436 GKFVVSNLGCMKGTSQVPDPKVLNHWEKPNPGWMKLNVDGSFDARY-GSGGIGAVLRNSA 494
Query: 924 GCFIAAG 944
G I G
Sbjct: 495 GSLIFCG 501
>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1357
Score = 67.4 bits (163), Expect(2) = 7e-16
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Frame = +2
Query: 2 MWQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFD 181
+W+VG G I+IW+ W+ + + + V DL+DV + W ++++ F+
Sbjct: 930 IWRVGDGTKIDIWSAPWVGDEEGRFIKSARVEG--LEVVGDLMDVERKEWNVELIERHFN 987
Query: 182 INASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAYQQLSLRYVTNVN--HKTSIAFWR 355
I I + D+L +K+G +SVK+AY L N++ H+ W
Sbjct: 988 ERDQQCILAIPLSTRCLQDELTWAYSKDGTYSVKTAYM---LGKGGNLDDFHRVWNILWS 1044
Query: 356 KDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCPFTRTLW 535
++ P+ F W+ S +P R L + + C C E HL CP + LW
Sbjct: 1045 LNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLW 1104
Score = 43.1 bits (100), Expect(2) = 7e-16
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +3
Query: 657 YINWIIWLEQYR-VLHDKSKPNWT---HVYNLVQGFVNALEVGLDFNLVNFQPISLERWK 824
YI W +W+E+ R V S+P + V+ F N V + + + +S RW
Sbjct: 1141 YILWNVWVERNRRVFEHTSQPATVVGQRIMRQVEDF-NNYAVKIYGGMRSSAALSPSRWY 1199
Query: 825 PPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFIAAGTNR 953
P +G +KLN D S +G+G + RDS G A T R
Sbjct: 1200 APPVGAIKLNTDASLAEE--GWVGLGVIARDSEGKVCFAATRR 1240
>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
At1g65750-like [Vitis vinifera]
Length = 820
Score = 68.6 bits (166), Expect(2) = 2e-14
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Frame = +2
Query: 5 WQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFDI 184
W + SG + +W DSW+P+ + ++ P + KV +LI W+ D + F
Sbjct: 392 WSIASGTKVQVWGDSWLPDSSNRLIITPPVAGFDGIKVDELITEGL--WREDFIRDKFMA 449
Query: 185 NASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAY------QQLSLRYVTNVNHKTSIA 346
+ I +I +P ++ D++ + G+++ +S Y +Q + ++V+ A
Sbjct: 450 RDADLILSIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSTALVASDVDSNFVWA 509
Query: 347 -FWRKDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCPFT 523
W+ P+ FAW+ + +PTR L+ C +C S +E H L+ C
Sbjct: 510 QLWKVTAPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAA 569
Query: 524 RTLW 535
R +W
Sbjct: 570 RDVW 573
Score = 37.4 bits (85), Expect(2) = 2e-14
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +3
Query: 612 VDWPIDKHDWTSFCIY-----INWIIWLEQYRVLHDKSKPNWTHVYNLVQGFVNALEVGL 776
VDW + F ++ + W +W + V+ + W H +V G LE
Sbjct: 589 VDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRI--W-HSQQVVNGCFTMLESWF 645
Query: 777 DFNLVNFQPISL----ERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFI 935
N +++ +W+ P GW+K+N+D + P IG V RD G F+
Sbjct: 646 HANETLATAVTVPSYSSKWQKPDYGWIKINVDGAV---FPDKGAIGAVFRDHQGRFM 699
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 59.7 bits (143), Expect(2) = 3e-14
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 7/205 (3%)
Frame = +2
Query: 8 QVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTR-TWKIDILNFLFDI 184
++G+G+ ++W W+ +V + + P + + ++ R W ++ L
Sbjct: 928 RIGNGRSTSLWYHWWVGG--GPLVDVMGSNIPEFMSHWQVSNIIKRGRWDTKKISHLLPP 985
Query: 185 NASLSIHNIYIPRNNPV-DKLH*TLTKNGQHSVKSAYQQLSLRYVTNVNHKTSIAFWRKD 361
+ I I + + V D KNG SVKSAY ++ R + WRK+
Sbjct: 986 DILKQIKEIPLASMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSWRGLWRKN 1045
Query: 362 LRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCPFTRTLWFS 541
+ + L W H+I+PT L+ + + C+ C+ IE + HL C ++W
Sbjct: 1046 IPFKYKLLIWNGIHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVASSVWIE 1105
Query: 542 -----TPWNLRLIDFENLQVKEWID 601
P N L F NL+ +EWID
Sbjct: 1106 ILKHHKPNNQNL--FFNLEWEEWID 1128
Score = 45.4 bits (106), Expect(2) = 3e-14
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Frame = +3
Query: 612 VDWPIDKHD-WTSFCIYINWIIWLEQYRVLHD--KSKPNWTHVYNLVQGFVNALEVGLDF 782
+D+ +++HD W + W IW + + + + + P +T+ + F N ++
Sbjct: 1127 IDFNLNQHDYWVTKFTTAFWHIWCSRNKTVFECAVNHPKFTYNRVVADFFTNIRAFQVNN 1186
Query: 783 NLVNFQPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNG 926
N + L RWKPP G++KLN D ++K + ++ GIG V RD+ G
Sbjct: 1187 TQGNGSKVVL-RWKPPHQGFLKLNTDGAWKADWENA-GIGGVFRDAVG 1232