BLASTX nr result

ID: Coptis24_contig00025819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025819
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containi...   172   2e-41
emb|CBI33393.3| unnamed protein product [Vitis vinifera]              172   2e-41
ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containi...   154   7e-36
ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   152   2e-35
ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-35

>ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  172 bits (437), Expect = 2e-41
 Identities = 78/116 (67%), Positives = 100/116 (86%)
 Frame = +2

Query: 2   GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181
           GLS+CA+LAALQ+GKQ+H L  K GY  DLFV NALITMY+KCG ++SAE +F DID  D
Sbjct: 460 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519

Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
           ++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 575



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
 Frame = +2

Query: 2   GLSACANL-AALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVN 178
           G S C  +  AL + KQ+           D+   N ++  Y++ G++ +A ++F ++   
Sbjct: 366 GYSQCGRMDEALHLFKQMVK--------KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417

Query: 179 DIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQG 346
           +I+SWN+LI+G   NG+  +A++ F  M  +G  PDQ TF   LS+C H   +  G
Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG 473


>emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  172 bits (437), Expect = 2e-41
 Identities = 78/116 (67%), Positives = 100/116 (86%)
 Frame = +2

Query: 2   GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181
           GLS+CA+LAALQ+GKQ+H L  K GY  DLFV NALITMY+KCG ++SAE +F DID  D
Sbjct: 222 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 281

Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
           ++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL
Sbjct: 282 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 337


>ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  154 bits (389), Expect = 7e-36
 Identities = 73/115 (63%), Positives = 91/115 (79%)
 Frame = +2

Query: 5   LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
           LSACANLAALQ+G Q+H    K GY NDLFVGNALI MY+KCGRV SAEQVF DI+  D+
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDL 522

Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
           ISWN+LI+GYALNG   +A + F +M  + + PD+VTF+ +LSAC+H+GL +QGL
Sbjct: 523 ISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGL 577



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/82 (34%), Positives = 47/82 (57%)
 Frame = +2

Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
           N +I+ Y++ G++  A ++F  +   +I+SWN+LIAG+  N    +A++    M  +G  
Sbjct: 394 NTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKK 453

Query: 281 PDQVTFVAVLSACTHSGLIDQG 346
           PDQ TF   LSAC +   +  G
Sbjct: 454 PDQSTFACTLSACANLAALQVG 475



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 53/86 (61%)
 Frame = +2

Query: 86  DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
           D+    AL++   + GR+  A+Q+F+ I  +D++ WN++IAGY+ +G   EA+ LF +M 
Sbjct: 327 DITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP 386

Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQ 343
           IK    + V++  ++S    +G +D+
Sbjct: 387 IK----NSVSWNTMISGYAQAGQMDR 408


>ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  152 bits (385), Expect = 2e-35
 Identities = 71/115 (61%), Positives = 89/115 (77%)
 Frame = +2

Query: 5   LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
           L A ANLAAL +G Q+H+L  K G+GNDLFV NA++TMY+K GRV  AE VF +I   D+
Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDV 520

Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
           +SWN+LIAGYALNG GKEAV+LF  M ++G+ PD+VTF  +LSAC H G +DQGL
Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 51/88 (57%)
 Frame = +2

Query: 86  DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
           D+   N +I  Y++ G++  A ++FN++   +++SWN+LI GY  NG   EA+  F  MK
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446

Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349
            +G  PDQ T V  L A  +   ++ G+
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/82 (36%), Positives = 49/82 (59%)
 Frame = +2

Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283
           A+I  Y + GR+  A ++F+ I V D + WN++I GYA  G   EA++LF EM  K    
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386

Query: 284 DQVTFVAVLSACTHSGLIDQGL 349
           D V++  +++A   +G +D+ L
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/83 (31%), Positives = 52/83 (62%)
 Frame = +2

Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
           N++IT Y+ CGR   A ++F ++   D++SWN +IA YA  G   +A+++F+EM+ + + 
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419

Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349
              V++ ++++    +GL  + L
Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439


>ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  152 bits (383), Expect = 4e-35
 Identities = 71/115 (61%), Positives = 89/115 (77%)
 Frame = +2

Query: 5   LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
           L A ANLAAL +G Q+H+L  K G+GNDLFV NA++TMY+K GRV  AE VF +I   D+
Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDV 520

Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
           +SWN+LIAGYALNG GKEAV+LF  M ++G+ PD+VTF  +LSAC H G +DQGL
Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 51/88 (57%)
 Frame = +2

Query: 86  DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
           D+   N +I  Y++ G++  A ++FN++   +++SWN+LI GY  NG   EA+  F  MK
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446

Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349
            +G  PDQ T V  L A  +   ++ G+
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/82 (36%), Positives = 49/82 (59%)
 Frame = +2

Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283
           A+I  Y + GR+  A ++F+ I V D + WN++I GYA  G   EA++LF EM  K    
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386

Query: 284 DQVTFVAVLSACTHSGLIDQGL 349
           D V++  +++A   +G +D+ L
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/83 (31%), Positives = 52/83 (62%)
 Frame = +2

Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
           N++IT Y+ CGR   A ++F ++   D++SWN +IA YA  G   +A+++F+EM+ + + 
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419

Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349
              V++ ++++    +GL  + L
Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439


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