BLASTX nr result
ID: Coptis24_contig00025819
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025819 (349 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containi... 172 2e-41 emb|CBI33393.3| unnamed protein product [Vitis vinifera] 172 2e-41 ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containi... 154 7e-36 ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 152 2e-35 ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containi... 152 4e-35 >ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Vitis vinifera] Length = 788 Score = 172 bits (437), Expect = 2e-41 Identities = 78/116 (67%), Positives = 100/116 (86%) Frame = +2 Query: 2 GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181 GLS+CA+LAALQ+GKQ+H L K GY DLFV NALITMY+KCG ++SAE +F DID D Sbjct: 460 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519 Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349 ++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 575 Score = 64.7 bits (156), Expect = 8e-09 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Frame = +2 Query: 2 GLSACANL-AALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVN 178 G S C + AL + KQ+ D+ N ++ Y++ G++ +A ++F ++ Sbjct: 366 GYSQCGRMDEALHLFKQMVK--------KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417 Query: 179 DIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQG 346 +I+SWN+LI+G NG+ +A++ F M +G PDQ TF LS+C H + G Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG 473 >emb|CBI33393.3| unnamed protein product [Vitis vinifera] Length = 752 Score = 172 bits (437), Expect = 2e-41 Identities = 78/116 (67%), Positives = 100/116 (86%) Frame = +2 Query: 2 GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181 GLS+CA+LAALQ+GKQ+H L K GY DLFV NALITMY+KCG ++SAE +F DID D Sbjct: 222 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 281 Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349 ++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL Sbjct: 282 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 337 >ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] Length = 748 Score = 154 bits (389), Expect = 7e-36 Identities = 73/115 (63%), Positives = 91/115 (79%) Frame = +2 Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184 LSACANLAALQ+G Q+H K GY NDLFVGNALI MY+KCGRV SAEQVF DI+ D+ Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDL 522 Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349 ISWN+LI+GYALNG +A + F +M + + PD+VTF+ +LSAC+H+GL +QGL Sbjct: 523 ISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGL 577 Score = 57.4 bits (137), Expect = 1e-06 Identities = 28/82 (34%), Positives = 47/82 (57%) Frame = +2 Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280 N +I+ Y++ G++ A ++F + +I+SWN+LIAG+ N +A++ M +G Sbjct: 394 NTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKK 453 Query: 281 PDQVTFVAVLSACTHSGLIDQG 346 PDQ TF LSAC + + G Sbjct: 454 PDQSTFACTLSACANLAALQVG 475 Score = 57.0 bits (136), Expect = 2e-06 Identities = 28/86 (32%), Positives = 53/86 (61%) Frame = +2 Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265 D+ AL++ + GR+ A+Q+F+ I +D++ WN++IAGY+ +G EA+ LF +M Sbjct: 327 DITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP 386 Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQ 343 IK + V++ ++S +G +D+ Sbjct: 387 IK----NSVSWNTMISGYAQAGQMDR 408 >ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] Length = 741 Score = 152 bits (385), Expect = 2e-35 Identities = 71/115 (61%), Positives = 89/115 (77%) Frame = +2 Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184 L A ANLAAL +G Q+H+L K G+GNDLFV NA++TMY+K GRV AE VF +I D+ Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDV 520 Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349 +SWN+LIAGYALNG GKEAV+LF M ++G+ PD+VTF +LSAC H G +DQGL Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575 Score = 64.3 bits (155), Expect = 1e-08 Identities = 31/88 (35%), Positives = 51/88 (57%) Frame = +2 Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265 D+ N +I Y++ G++ A ++FN++ +++SWN+LI GY NG EA+ F MK Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446 Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349 +G PDQ T V L A + ++ G+ Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474 Score = 58.9 bits (141), Expect = 4e-07 Identities = 30/82 (36%), Positives = 49/82 (59%) Frame = +2 Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283 A+I Y + GR+ A ++F+ I V D + WN++I GYA G EA++LF EM K Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386 Query: 284 DQVTFVAVLSACTHSGLIDQGL 349 D V++ +++A +G +D+ L Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408 Score = 55.1 bits (131), Expect = 6e-06 Identities = 26/83 (31%), Positives = 52/83 (62%) Frame = +2 Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280 N++IT Y+ CGR A ++F ++ D++SWN +IA YA G +A+++F+EM+ + + Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419 Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349 V++ ++++ +GL + L Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439 >ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] Length = 741 Score = 152 bits (383), Expect = 4e-35 Identities = 71/115 (61%), Positives = 89/115 (77%) Frame = +2 Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184 L A ANLAAL +G Q+H+L K G+GNDLFV NA++TMY+K GRV AE VF +I D+ Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDV 520 Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349 +SWN+LIAGYALNG GKEAV+LF M ++G+ PD+VTF +LSAC H G +DQGL Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575 Score = 64.3 bits (155), Expect = 1e-08 Identities = 31/88 (35%), Positives = 51/88 (57%) Frame = +2 Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265 D+ N +I Y++ G++ A ++FN++ +++SWN+LI GY NG EA+ F MK Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446 Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349 +G PDQ T V L A + ++ G+ Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474 Score = 58.9 bits (141), Expect = 4e-07 Identities = 30/82 (36%), Positives = 49/82 (59%) Frame = +2 Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283 A+I Y + GR+ A ++F+ I V D + WN++I GYA G EA++LF EM K Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386 Query: 284 DQVTFVAVLSACTHSGLIDQGL 349 D V++ +++A +G +D+ L Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408 Score = 55.1 bits (131), Expect = 6e-06 Identities = 26/83 (31%), Positives = 52/83 (62%) Frame = +2 Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280 N++IT Y+ CGR A ++F ++ D++SWN +IA YA G +A+++F+EM+ + + Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419 Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349 V++ ++++ +GL + L Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439