BLASTX nr result
ID: Coptis24_contig00025819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025819
(349 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containi... 172 2e-41
emb|CBI33393.3| unnamed protein product [Vitis vinifera] 172 2e-41
ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containi... 154 7e-36
ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 152 2e-35
ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containi... 152 4e-35
>ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 172 bits (437), Expect = 2e-41
Identities = 78/116 (67%), Positives = 100/116 (86%)
Frame = +2
Query: 2 GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181
GLS+CA+LAALQ+GKQ+H L K GY DLFV NALITMY+KCG ++SAE +F DID D
Sbjct: 460 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519
Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 575
Score = 64.7 bits (156), Expect = 8e-09
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 GLSACANL-AALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVN 178
G S C + AL + KQ+ D+ N ++ Y++ G++ +A ++F ++
Sbjct: 366 GYSQCGRMDEALHLFKQMVK--------KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417
Query: 179 DIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQG 346
+I+SWN+LI+G NG+ +A++ F M +G PDQ TF LS+C H + G
Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG 473
>emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 172 bits (437), Expect = 2e-41
Identities = 78/116 (67%), Positives = 100/116 (86%)
Frame = +2
Query: 2 GLSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVND 181
GLS+CA+LAALQ+GKQ+H L K GY DLFV NALITMY+KCG ++SAE +F DID D
Sbjct: 222 GLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 281
Query: 182 IISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
++SWN+LIA YALNGNG+EA++LFH+M+++G+ PD+VTFV +LSAC+H GLIDQGL
Sbjct: 282 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 337
>ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 154 bits (389), Expect = 7e-36
Identities = 73/115 (63%), Positives = 91/115 (79%)
Frame = +2
Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
LSACANLAALQ+G Q+H K GY NDLFVGNALI MY+KCGRV SAEQVF DI+ D+
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDL 522
Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
ISWN+LI+GYALNG +A + F +M + + PD+VTF+ +LSAC+H+GL +QGL
Sbjct: 523 ISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGL 577
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +2
Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
N +I+ Y++ G++ A ++F + +I+SWN+LIAG+ N +A++ M +G
Sbjct: 394 NTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKK 453
Query: 281 PDQVTFVAVLSACTHSGLIDQG 346
PDQ TF LSAC + + G
Sbjct: 454 PDQSTFACTLSACANLAALQVG 475
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/86 (32%), Positives = 53/86 (61%)
Frame = +2
Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
D+ AL++ + GR+ A+Q+F+ I +D++ WN++IAGY+ +G EA+ LF +M
Sbjct: 327 DITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP 386
Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQ 343
IK + V++ ++S +G +D+
Sbjct: 387 IK----NSVSWNTMISGYAQAGQMDR 408
>ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 152 bits (385), Expect = 2e-35
Identities = 71/115 (61%), Positives = 89/115 (77%)
Frame = +2
Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
L A ANLAAL +G Q+H+L K G+GNDLFV NA++TMY+K GRV AE VF +I D+
Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDV 520
Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
+SWN+LIAGYALNG GKEAV+LF M ++G+ PD+VTF +LSAC H G +DQGL
Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
D+ N +I Y++ G++ A ++FN++ +++SWN+LI GY NG EA+ F MK
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446
Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349
+G PDQ T V L A + ++ G+
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +2
Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283
A+I Y + GR+ A ++F+ I V D + WN++I GYA G EA++LF EM K
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386
Query: 284 DQVTFVAVLSACTHSGLIDQGL 349
D V++ +++A +G +D+ L
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/83 (31%), Positives = 52/83 (62%)
Frame = +2
Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
N++IT Y+ CGR A ++F ++ D++SWN +IA YA G +A+++F+EM+ + +
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419
Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349
V++ ++++ +GL + L
Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439
>ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 152 bits (383), Expect = 4e-35
Identities = 71/115 (61%), Positives = 89/115 (77%)
Frame = +2
Query: 5 LSACANLAALQIGKQIHNLAAKIGYGNDLFVGNALITMYSKCGRVTSAEQVFNDIDVNDI 184
L A ANLAAL +G Q+H+L K G+GNDLFV NA++TMY+K GRV AE VF +I D+
Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDV 520
Query: 185 ISWNALIAGYALNGNGKEAVQLFHEMKIKGLHPDQVTFVAVLSACTHSGLIDQGL 349
+SWN+LIAGYALNG GKEAV+LF M ++G+ PD+VTF +LSAC H G +DQGL
Sbjct: 521 VSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGL 575
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 86 DLFVGNALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMK 265
D+ N +I Y++ G++ A ++FN++ +++SWN+LI GY NG EA+ F MK
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446
Query: 266 IKGLHPDQVTFVAVLSACTHSGLIDQGL 349
+G PDQ T V L A + ++ G+
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGV 474
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +2
Query: 104 ALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLHP 283
A+I Y + GR+ A ++F+ I V D + WN++I GYA G EA++LF EM K
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---- 386
Query: 284 DQVTFVAVLSACTHSGLIDQGL 349
D V++ +++A +G +D+ L
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKAL 408
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/83 (31%), Positives = 52/83 (62%)
Frame = +2
Query: 101 NALITMYSKCGRVTSAEQVFNDIDVNDIISWNALIAGYALNGNGKEAVQLFHEMKIKGLH 280
N++IT Y+ CGR A ++F ++ D++SWN +IA YA G +A+++F+EM+ + +
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV- 419
Query: 281 PDQVTFVAVLSACTHSGLIDQGL 349
V++ ++++ +GL + L
Sbjct: 420 ---VSWNSLITGYVQNGLYFEAL 439