BLASTX nr result
ID: Coptis24_contig00025807
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025807 (706 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002281441.1| PREDICTED: protein LHCP TRANSLOCATION DEFECT... 238 1e-60 ref|XP_002522996.1| conserved hypothetical protein [Ricinus comm... 237 2e-60 ref|XP_002319824.1| predicted protein [Populus trichocarpa] gi|2... 237 2e-60 emb|CAN65357.1| hypothetical protein VITISV_041274 [Vitis vinifera] 237 2e-60 gb|ABK94006.1| unknown [Populus trichocarpa] 234 1e-59 >ref|XP_002281441.1| PREDICTED: protein LHCP TRANSLOCATION DEFECT [Vitis vinifera] gi|297735982|emb|CBI23956.3| unnamed protein product [Vitis vinifera] Length = 172 Score = 238 bits (606), Expect = 1e-60 Identities = 124/176 (70%), Positives = 138/176 (78%), Gaps = 4/176 (2%) Frame = +2 Query: 68 MASISCTFHPTFPC----SSSSRWKTSCQFLGNGRKLGWFKVCSVRSIIGPTNGSKTKCW 235 MASI CT H F S S+ + Q LG RKL W S + +GP+NGS+ CW Sbjct: 1 MASIPCTTHLLFTSKPQISPSNPPIFTSQLLGIPRKLSW----STPTRLGPSNGSRATCW 56 Query: 236 FKFGKNGVDAEGAGIYGSQSREDFDRDDVEQYFNYMGMLAVEGTYDKMEALLQLDIHPVD 415 F+FG GVDAEGAGIYGSQ+R+DFDRDDVEQYFNYMGMLAVEGTYDKMEALL +IHPVD Sbjct: 57 FRFGNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 116 Query: 416 ILLMMAASEGDKPKIEELLRAGASYTVKDVDGRTAIDRAANEEIKQFILEFSVQKA 583 ILLMMAASEGD+PKIEELLRAGASYTVKD DGRTA++RAAN+EIK IL FS QKA Sbjct: 117 ILLMMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA 172 >ref|XP_002522996.1| conserved hypothetical protein [Ricinus communis] gi|223537808|gb|EEF39426.1| conserved hypothetical protein [Ricinus communis] Length = 175 Score = 237 bits (605), Expect = 2e-60 Identities = 134/183 (73%), Positives = 144/183 (78%), Gaps = 11/183 (6%) Frame = +2 Query: 68 MASI---SCTFHPTFPCSSSSRWKT-------SCQFLGNGRKLGWFKVCSVRSI-IGPTN 214 MASI SCT H T P + + KT S FLG K VC VR IGP+N Sbjct: 1 MASIPSSSCTAH-TLPITCKPQ-KTATFLPNFSTPFLGTKSK-----VCLVRPCRIGPSN 53 Query: 215 GSKTKCWFKFGKNGVDAEGAGIYGSQSREDFDRDDVEQYFNYMGMLAVEGTYDKMEALLQ 394 GS+ KCWFKFGKNGVDAEGAGIYGSQSR+DFDRDDVEQYFNYMGMLAVEGTYDKMEALL Sbjct: 54 GSRVKCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLS 113 Query: 395 LDIHPVDILLMMAASEGDKPKIEELLRAGASYTVKDVDGRTAIDRAANEEIKQFILEFSV 574 DIHPVDILLM+AASEGDKPKIEELLRAGASY VKD DGRTA+DR ANEEI++FI+ FSV Sbjct: 114 QDIHPVDILLMLAASEGDKPKIEELLRAGASYNVKDADGRTALDR-ANEEIREFIVGFSV 172 Query: 575 QKA 583 QKA Sbjct: 173 QKA 175 >ref|XP_002319824.1| predicted protein [Populus trichocarpa] gi|222858200|gb|EEE95747.1| predicted protein [Populus trichocarpa] Length = 171 Score = 237 bits (605), Expect = 2e-60 Identities = 124/176 (70%), Positives = 137/176 (77%), Gaps = 4/176 (2%) Frame = +2 Query: 68 MASISCTFHPTFPCSSSSRW----KTSCQFLGNGRKLGWFKVCSVRSIIGPTNGSKTKCW 235 MASI T H T + S K + QFLG +GW + C IGP+NGS+ KCW Sbjct: 1 MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCR----IGPSNGSRAKCW 56 Query: 236 FKFGKNGVDAEGAGIYGSQSREDFDRDDVEQYFNYMGMLAVEGTYDKMEALLQLDIHPVD 415 FKFGKNGVDAEGAGIYGSQ+R+DFDRDDVEQYFNYMGMLAVEGTYDKMEALL +IHPVD Sbjct: 57 FKFGKNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 116 Query: 416 ILLMMAASEGDKPKIEELLRAGASYTVKDVDGRTAIDRAANEEIKQFILEFSVQKA 583 ILLM+AASEGDKPKIEELLRAGA Y +KD DGRTA+DR ANEE K FIL SV+KA Sbjct: 117 ILLMLAASEGDKPKIEELLRAGAGYDIKDADGRTALDR-ANEETKDFILGLSVRKA 171 >emb|CAN65357.1| hypothetical protein VITISV_041274 [Vitis vinifera] Length = 172 Score = 237 bits (605), Expect = 2e-60 Identities = 124/176 (70%), Positives = 138/176 (78%), Gaps = 4/176 (2%) Frame = +2 Query: 68 MASISCTFHPTFPC----SSSSRWKTSCQFLGNGRKLGWFKVCSVRSIIGPTNGSKTKCW 235 MASI CT H F S S+ + Q LG RKL W S + +GP+NGS+ CW Sbjct: 1 MASIPCTTHLLFTSKPQISPSNPPIFTSQXLGIPRKLSW----STPTRLGPSNGSRATCW 56 Query: 236 FKFGKNGVDAEGAGIYGSQSREDFDRDDVEQYFNYMGMLAVEGTYDKMEALLQLDIHPVD 415 F+FG GVDAEGAGIYGSQ+R+DFDRDDVEQYFNYMGMLAVEGTYDKMEALL +IHPVD Sbjct: 57 FRFGNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 116 Query: 416 ILLMMAASEGDKPKIEELLRAGASYTVKDVDGRTAIDRAANEEIKQFILEFSVQKA 583 ILLMMAASEGD+PKIEELLRAGASYTVKD DGRTA++RAAN+EIK IL FS QKA Sbjct: 117 ILLMMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA 172 >gb|ABK94006.1| unknown [Populus trichocarpa] Length = 171 Score = 234 bits (597), Expect = 1e-59 Identities = 123/176 (69%), Positives = 136/176 (77%), Gaps = 4/176 (2%) Frame = +2 Query: 68 MASISCTFHPTFPCSSSSRW----KTSCQFLGNGRKLGWFKVCSVRSIIGPTNGSKTKCW 235 MASI T H T + S K + QFLG +GW + C IGP+NGS+ KCW Sbjct: 1 MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCR----IGPSNGSRAKCW 56 Query: 236 FKFGKNGVDAEGAGIYGSQSREDFDRDDVEQYFNYMGMLAVEGTYDKMEALLQLDIHPVD 415 FKFGKNGVDAEG GIYGSQ+R+DFDRDDVEQYFNYMGMLAVEGTYDKMEALL +IHPVD Sbjct: 57 FKFGKNGVDAEGDGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 116 Query: 416 ILLMMAASEGDKPKIEELLRAGASYTVKDVDGRTAIDRAANEEIKQFILEFSVQKA 583 ILLM+AASEGDKPKIEELLRAGA Y +KD DGRTA+DR ANEE K FIL SV+KA Sbjct: 117 ILLMLAASEGDKPKIEELLRAGAVYDIKDADGRTALDR-ANEETKDFILGLSVRKA 171