BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025741
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525492.1| pentatricopeptide repeat-containing protein,...   101   7e-20
ref|XP_002888836.1| pentatricopeptide repeat-containing protein ...    97   2e-18
ref|NP_177298.1| pentatricopeptide repeat-containing protein [Ar...    96   3e-18
dbj|BAF02198.1| hypothetical protein [Arabidopsis thaliana]            96   3e-18
ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    95   7e-18

>ref|XP_002525492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535171|gb|EEF36850.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 542

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/87 (58%), Positives = 58/87 (66%)
 Frame = +3

Query: 3   VLWTAIITTFAEQEPEKAXXXXXXXXXXXXXPDCYTFSIVIKACAGLATERHGSAAHALV 182
           V WT IIT  AE++PE+A             PD YTFSIV+KACAGL TER     H+ V
Sbjct: 339 VSWTGIITALAERQPEEALFLFRQLHREDLAPDWYTFSIVLKACAGLGTERQALTVHSRV 398

Query: 183 IRSGFEGHTVLGNALIHAYARCGSIDL 263
           I++GFEG  VL NALIHAYARCGSI L
Sbjct: 399 IKAGFEGDVVLENALIHAYARCGSIFL 425


>ref|XP_002888836.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334677|gb|EFH65095.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 744

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/87 (54%), Positives = 56/87 (64%)
 Frame = +3

Query: 3   VLWTAIITTFAEQEPEKAXXXXXXXXXXXXXPDCYTFSIVIKACAGLATERHGSAAHALV 182
           V WT IIT FA  +PE+A             PD YTFS V+KACAGL T RH  + HA V
Sbjct: 336 VAWTGIITAFAVYDPERAILLFGQLRHEKLSPDWYTFSSVLKACAGLVTARHALSIHAQV 395

Query: 183 IRSGFEGHTVLGNALIHAYARCGSIDL 263
           I+ GF   TV+ N+LIHAYA+CGS+DL
Sbjct: 396 IKGGFATDTVVNNSLIHAYAKCGSLDL 422


>ref|NP_177298.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169716|sp|Q9C9H9.1|PP114_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g71420 gi|12323734|gb|AAG51830.1|AC016163_19
           hypothetical protein; 56014-58251 [Arabidopsis thaliana]
           gi|332197078|gb|AEE35199.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 745

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 47/87 (54%), Positives = 55/87 (63%)
 Frame = +3

Query: 3   VLWTAIITTFAEQEPEKAXXXXXXXXXXXXXPDCYTFSIVIKACAGLATERHGSAAHALV 182
           V W  IIT FA  +PE+A             PD YTFS V+KACAGL T RH  + HA V
Sbjct: 336 VAWNGIITAFAVYDPERAIHLFGQLRQEKLSPDWYTFSSVLKACAGLVTARHALSIHAQV 395

Query: 183 IRSGFEGHTVLGNALIHAYARCGSIDL 263
           I+ GF   TVL N+LIHAYA+CGS+DL
Sbjct: 396 IKGGFLADTVLNNSLIHAYAKCGSLDL 422


>dbj|BAF02198.1| hypothetical protein [Arabidopsis thaliana]
          Length = 727

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 47/87 (54%), Positives = 55/87 (63%)
 Frame = +3

Query: 3   VLWTAIITTFAEQEPEKAXXXXXXXXXXXXXPDCYTFSIVIKACAGLATERHGSAAHALV 182
           V W  IIT FA  +PE+A             PD YTFS V+KACAGL T RH  + HA V
Sbjct: 336 VAWNGIITAFAVYDPERAIHLFGQLRQEKLSPDWYTFSSVLKACAGLVTARHALSIHAQV 395

Query: 183 IRSGFEGHTVLGNALIHAYARCGSIDL 263
           I+ GF   TVL N+LIHAYA+CGS+DL
Sbjct: 396 IKGGFLADTVLNNSLIHAYAKCGSLDL 422


>ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 46/87 (52%), Positives = 58/87 (66%)
 Frame = +3

Query: 3   VLWTAIITTFAEQEPEKAXXXXXXXXXXXXXPDCYTFSIVIKACAGLATERHGSAAHALV 182
           V WTA+I+ FAE++PE+A             PD YTFSI +KACA   TE+H  A H+ V
Sbjct: 376 VSWTALISVFAERDPEQAFLLFCQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQV 435

Query: 183 IRSGFEGHTVLGNALIHAYARCGSIDL 263
           I+ GF+  TVL NAL+HAYARCGS+ L
Sbjct: 436 IKKGFQEDTVLCNALMHAYARCGSLAL 462