BLASTX nr result
ID: Coptis24_contig00025687
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025687 (864 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi... 360 2e-97 ref|NP_194257.1| pentatricopeptide repeat-containing protein [Ar... 351 1e-94 ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|2... 348 9e-94 ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab... 347 2e-93 ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 340 3e-91 >ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera] gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera] Length = 516 Score = 360 bits (924), Expect = 2e-97 Identities = 175/268 (65%), Positives = 213/268 (79%) Frame = -1 Query: 834 DSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHACV 655 DSVSWNSMLTGYI HGL ++AL IFR M+ GFEPD+VAIST+++ S K+A ++H V Sbjct: 247 DSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAGQIHGWV 306 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHSQALEYF 475 LRRG + +LSIANSLI LYS GKLD+ACWLFD M +RDVVSWN+IIS H K +A+ YF Sbjct: 307 LRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKDLKAITYF 366 Query: 474 NQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGR 295 ++M+ +++ PD VTFVSLLS CAHLGLV+DG LF M+ YG+ P MEHYACMVNL GR Sbjct: 367 SRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYGR 426 Query: 294 AGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFEL 115 AGLI +AY+I+ K+MEF+AGPTVWGALLYAC H N+D+G+ AA LF+LEPDN HNFEL Sbjct: 427 AGLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFEL 486 Query: 114 LIKIYDNAGRWDKVEKVMQSMADRGLDS 31 L+ IY N GR + VEKV + MADRG DS Sbjct: 487 LMNIYRNVGRLEDVEKVRKMMADRGFDS 514 Score = 83.2 bits (204), Expect = 7e-14 Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%) Frame = -1 Query: 825 SWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSK---FSSSKVAFEVHACV 655 +WNS+++GY GL +A+ ++ M ++G PD +L S V EVH V Sbjct: 149 AWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHV 208 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHS---QAL 484 +R G + N+L+ +Y++ G + +A +FDK+V RD VSWN++++G+ +H QAL Sbjct: 209 VRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQAL 268 Query: 483 EYFNQMENSNISPDSVTFVSLLS 415 F +M PD+V ++++ Sbjct: 269 SIFRRMLQYGFEPDAVAISTVVT 291 Score = 63.9 bits (154), Expect = 4e-08 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 8/134 (5%) Frame = -1 Query: 750 IDDGFEPDSVAISTILS---KFSSSKVAFEVHACVLRRGHEQSLSIANSLIALYSEQGKL 580 I DG D+ S++L + + +H + +S+++++ L+ LY+ G++ Sbjct: 71 IQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRI 130 Query: 579 DEACWLFDKMV--DRDVVSWNAIISGHWK---HSQALEYFNQMENSNISPDSVTFVSLLS 415 +EA LFD+M +R +WN++ISG+ + + A+ + QME + PD TF +L Sbjct: 131 EEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLK 190 Query: 414 VCAHLGLVEDGREL 373 C +G + G E+ Sbjct: 191 ACGGIGSISVGEEV 204 >ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic; Flags: Precursor gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana] gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana] gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 527 Score = 351 bits (900), Expect = 1e-94 Identities = 164/268 (61%), Positives = 210/268 (78%) Frame = -1 Query: 834 DSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHACV 655 D VSWNSMLTGY+HHGL+ EALDIFR M+ +G EPD VAIS++L++ S K ++H V Sbjct: 260 DYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWV 319 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHSQALEYF 475 +RRG E LS+AN+LI LYS++G+L +AC++FD+M++RD VSWNAIIS H K+S L+YF Sbjct: 320 IRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYF 379 Query: 474 NQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGR 295 QM +N PD +TFVS+LS+CA+ G+VEDG LF M YGI P+MEHYACMVNL GR Sbjct: 380 EQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGR 439 Query: 294 AGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFEL 115 AG++ +AY ++V++M +AGPTVWGALLYAC HGN D+GE AA RLF+LEPDN HNFEL Sbjct: 440 AGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFEL 499 Query: 114 LIKIYDNAGRWDKVEKVMQSMADRGLDS 31 LI+IY A R + VE+V Q M DRGL++ Sbjct: 500 LIRIYSKAKRAEDVERVRQMMVDRGLET 527 Score = 87.4 bits (215), Expect = 4e-15 Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Frame = -1 Query: 825 SWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSK---FSSSKVAFEVHACV 655 +WNS+++GY G +A+ ++ M +DG +PD +L S ++ +H + Sbjct: 162 AWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDL 221 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHS---QAL 484 ++ G + + N+L+ +Y++ G + +A +FD + +D VSWN++++G+ H +AL Sbjct: 222 VKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEAL 281 Query: 483 EYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNL 304 + F M + I PD V++ SV A + + GR+L + R G++ + ++ L Sbjct: 282 DIFRLMVQNGIEPDK---VAISSVLARVLSFKHGRQLHGWVIRR-GMEWELSVANALIVL 337 Query: 303 LGRAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGN 187 + G + A I + +E D W A++ A S + N Sbjct: 338 YSKRGQLGQACFIFDQMLERDT--VSWNAIISAHSKNSN 374 >ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa] Length = 442 Score = 348 bits (893), Expect = 9e-94 Identities = 172/266 (64%), Positives = 199/266 (74%) Frame = -1 Query: 834 DSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHACV 655 DS+SWNSMLTGYI HGL+ EAL F M+ DG E DSVA+STIL+ SS +VA ++H + Sbjct: 177 DSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILANVSSFEVAVQIHGWI 236 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHSQALEYF 475 +RRG E SIANSLIA+YS KLD A WLFD M +D+VSWN+IIS H K +AL YF Sbjct: 237 VRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKDLKALTYF 296 Query: 474 NQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGR 295 ME PD +TFVSLLS CAHLGLV+DG LF MK +Y I P MEHYACMVNL GR Sbjct: 297 ELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACMVNLYGR 356 Query: 294 AGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFEL 115 AGLIN+AY I+ QMEF+AGPTVWGALLY+C H N+D GE AA LFDLEPDN HNFEL Sbjct: 357 AGLINEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFDLEPDNEHNFEL 416 Query: 114 LIKIYDNAGRWDKVEKVMQSMADRGL 37 L+KIYDNAGR + E+V + M DRGL Sbjct: 417 LMKIYDNAGRLEDAERVRKMMVDRGL 442 Score = 76.6 bits (187), Expect = 7e-12 Identities = 40/142 (28%), Positives = 79/142 (55%), Gaps = 6/142 (4%) Frame = -1 Query: 822 WNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSS---KVAFEVHACVL 652 WNS++ GY GL +A+ ++ M ++G EPD +L ++ VH ++ Sbjct: 80 WNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLKACGGIGLIRIGEAVHRDLV 139 Query: 651 RRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKH---SQALE 481 R G + N+L+ +Y++ G + +A +FDK+ +D +SWN++++G+ +H ++AL Sbjct: 140 RLGFANDGFVLNALVDMYAKCGDIVKARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALH 199 Query: 480 YFNQMENSNISPDSVTFVSLLS 415 F+ M + + DSV ++L+ Sbjct: 200 TFHSMVHDGMELDSVAVSTILA 221 Score = 57.8 bits (138), Expect = 3e-06 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 8/131 (6%) Frame = -1 Query: 750 IDDGFEPDSVAISTILS---KFSSSKVAFEVHACVLRRGHEQSLSIANSLIALYSEQGKL 580 ++ G D+ S++L + ++ ++ ++H + ++ I++ L+ LYS G + Sbjct: 1 MEKGIRIDTQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDV 60 Query: 579 DEACWLFDKMVDR--DVVSWNAIISGHWK---HSQALEYFNQMENSNISPDSVTFVSLLS 415 + A +FD+M R WN++I+G+ + + A+ + QME + PD TF +L Sbjct: 61 EVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLK 120 Query: 414 VCAHLGLVEDG 382 C +GL+ G Sbjct: 121 ACGGIGLIRIG 131 >ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] Length = 758 Score = 347 bits (891), Expect = 2e-93 Identities = 159/268 (59%), Positives = 212/268 (79%) Frame = -1 Query: 834 DSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHACV 655 D VSWNSMLTGY+HHGL+ EALDIFR M+ +G +PD VAIS++L++ S K ++H V Sbjct: 491 DYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVLARVLSFKHGRQLHGWV 550 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHSQALEYF 475 +RRG E LS+AN+LI LYS++G+L +AC++FD+M++RD VSWNAIIS H + S +YF Sbjct: 551 IRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSRDSNGFKYF 610 Query: 474 NQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGR 295 QM++++ PD +TFVS+LS+CA+ G+VEDG LF M YGI P+MEHYACMVNL GR Sbjct: 611 EQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVNLYGR 670 Query: 294 AGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFEL 115 AG++ +AY ++V++MEF+AGPTVWGALLYAC HGN D+GE +A RLF+LEPDN HNFEL Sbjct: 671 AGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFELEPDNEHNFEL 730 Query: 114 LIKIYDNAGRWDKVEKVMQSMADRGLDS 31 L++IY A R + VE+V Q + DRGL++ Sbjct: 731 LMRIYSKAKRAEDVERVRQMLVDRGLET 758 Score = 87.8 bits (216), Expect = 3e-15 Identities = 67/272 (24%), Positives = 132/272 (48%), Gaps = 8/272 (2%) Frame = -1 Query: 840 EPDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSK---FSSSKVAFE 670 E +WNS+++GY G +A+ ++ M +DG +PD +L S ++ Sbjct: 388 ESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEA 447 Query: 669 VHACVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHS- 493 +H +++ G + + N+L+ +Y++ G + +A +FD + ++D VSWN++++G+ H Sbjct: 448 IHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGYLHHGL 507 Query: 492 --QALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYA 319 +AL+ F M + I PD V++ SV A + + GR+L + R G++ + Sbjct: 508 LHEALDIFRLMVQNGIDPDK---VAISSVLARVLSFKHGRQLHGWVIRR-GMEWELSVAN 563 Query: 318 CMVNLLGRAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARL--FDL 145 ++ L + G + A I + +E D W A++ SAH G ++ D Sbjct: 564 ALIVLYSKRGQLGQACFIFDQMLERDT--VSWNAII---SAHSRDSNGFKYFEQMQHADA 618 Query: 144 EPDNAHNFELLIKIYDNAGRWDKVEKVMQSMA 49 +PD F ++ + N G + E++ M+ Sbjct: 619 KPDGI-TFVSVLSLCANTGMVEDGERLFSLMS 649 >ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] Length = 489 Score = 340 bits (871), Expect = 3e-91 Identities = 164/268 (61%), Positives = 205/268 (76%) Frame = -1 Query: 834 DSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHACV 655 D VSWNSMLTGY HGL EALDIF MI +G+EPDSVA+ST+LS SS K +H V Sbjct: 222 DIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWV 281 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISGHWKHSQALEYF 475 +R G E +LSIANSLI +Y++ GKL+ A WLF +M +D+VSWN+IIS H+ ++AL YF Sbjct: 282 IRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYF 341 Query: 474 NQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGR 295 ME+ +SPD VTFVSLLS CAHLGLV++G EL+ MK +YGI+P +EHYACMVNL GR Sbjct: 342 EVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVNLYGR 401 Query: 294 AGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFEL 115 AG+I +AY I+ K ME +AGPT+WGALLYAC H ++D+ E AA RLF+LEPDN NFEL Sbjct: 402 AGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFEL 461 Query: 114 LIKIYDNAGRWDKVEKVMQSMADRGLDS 31 L+KIY NAGR + ++V MA+RGL+S Sbjct: 462 LMKIYGNAGRSEDEKRVKLMMAERGLNS 489 Score = 90.9 bits (224), Expect = 3e-16 Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 6/143 (4%) Frame = -1 Query: 825 SWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSK---FSSSKVAFEVHACV 655 +WNS+++GY GL +AL ++ M ++G EPD+ +L S ++ VH V Sbjct: 124 AWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHV 183 Query: 654 LRRGHEQSLSIANSLIALYSEQGKLDEACWLFDKMVDRDVVSWNAIISG---HWKHSQAL 484 +R G + + N+L+ +YS+ G + A +FD++ +D+VSWN++++G H H +AL Sbjct: 184 VRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEAL 243 Query: 483 EYFNQMENSNISPDSVTFVSLLS 415 + F+QM PDSV +LLS Sbjct: 244 DIFDQMIQEGYEPDSVALSTLLS 266 Score = 62.8 bits (151), Expect = 1e-07 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 12/209 (5%) Frame = -1 Query: 780 VEALDI----FRGMIDDGFEPDSVAISTILS---KFSSSKVAFEVHACVLRRGHEQSLSI 622 ++ALD ID+G D S++L + + +H + +++ I Sbjct: 32 IQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGI 91 Query: 621 ANSLIALYSEQGKLDEACWLFDKMVDRD--VVSWNAIISGHWK---HSQALEYFNQMENS 457 ++ L+ LY+ G +++A +FD+M +R+ +WN++ISG+ + + AL + QME Sbjct: 92 SSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEE 151 Query: 456 NISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLGRAGLIND 277 + PD+ TF +L C +G ++ G E + R G + +V++ + G I Sbjct: 152 GVEPDNFTFPRVLKACGGIGSIQIG-EAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 210 Query: 276 AYDIVVKQMEFDAGPTVWGALLYACSAHG 190 A V Q+E+ W ++L + HG Sbjct: 211 ARK-VFDQIEY-KDIVSWNSMLTGYTRHG 237