BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025615
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520160.1| pentatricopeptide repeat-containing protein,...   147   1e-33
ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|2...   139   2e-31
gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]            134   6e-30
ref|NP_176180.1| pentatricopeptide repeat-containing protein [Ar...   134   6e-30
emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]   134   6e-30

>ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540652|gb|EEF42215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 330

 Score =  147 bits (370), Expect = 1e-33
 Identities = 68/100 (68%), Positives = 82/100 (82%)
 Frame = +2

Query: 2   FVTALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVN 181
           F  AL+LF+Q+Q+LFEPDG+TMQSV+ AC GL +L LGMW H Y+LRK ++ V  DVLV+
Sbjct: 213 FDAALKLFVQLQELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLRKFDVEVTLDVLVD 272

Query: 182 NSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGM 301
           N +LDMYCKCGSLD+A QVF RM KRD+TSWN MILGF M
Sbjct: 273 NCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAM 312


>ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score =  139 bits (351), Expect = 2e-31
 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 2/102 (1%)
 Frame = +2

Query: 2   FVTALRLFIQVQK-LFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKND-VL 175
           F TAL+LF+Q Q+  FEPDG+T+QSVI AC GL +L LGMWAH ++LR C +SV  D VL
Sbjct: 208 FETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVL 267

Query: 176 VNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGM 301
           VNNS+LDMYCKCGSLD+A Q+F  M K DVTSWN MILGF M
Sbjct: 268 VNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAM 309



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/82 (41%), Positives = 49/82 (59%)
 Frame = +2

Query: 50  PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNSVLDMYCKCGSLDLA 229
           PD  T   V+ AC  L +L+ G  AH ++L+   L  ++DV +NNS++  Y  CGSL+ A
Sbjct: 124 PDNHTFPFVLKACAYLFALFEGKQAHAHLLK---LGFQSDVYINNSLIHFYASCGSLESA 180

Query: 230 HQVFRRMSKRDVTSWNLMILGF 295
             VF +M +R + SWN MI  F
Sbjct: 181 KNVFDKMPQRSLVSWNAMIDAF 202


>gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  134 bits (338), Expect = 6e-30
 Identities = 61/96 (63%), Positives = 78/96 (81%)
 Frame = +2

Query: 8   TALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187
           +AL+LF ++Q+ FEPDG+TMQSV+ AC GL SL LG WAH ++LRKC++ V  DVLV NS
Sbjct: 292 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 351

Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295
           +++MYCKCGSL +A QVF+ M KRD+ SWN MILGF
Sbjct: 352 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 387



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +2

Query: 23  FIQVQKLFE-----PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187
           F+  +K+ E     PD  T   V+ AC  +     G   H  +++        DV VNN 
Sbjct: 192 FMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH---GFGGDVYVNNG 248

Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMI 286
           ++ +Y  CG LDLA +VF  M +R + SWN MI
Sbjct: 249 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 281


>ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
           gi|332195486|gb|AEE33607.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  134 bits (338), Expect = 6e-30
 Identities = 61/96 (63%), Positives = 78/96 (81%)
 Frame = +2

Query: 8   TALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187
           +AL+LF ++Q+ FEPDG+TMQSV+ AC GL SL LG WAH ++LRKC++ V  DVLV NS
Sbjct: 235 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294

Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295
           +++MYCKCGSL +A QVF+ M KRD+ SWN MILGF
Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 330



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +2

Query: 23  FIQVQKLFE-----PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187
           F+  +K+ E     PD  T   V+ AC  +     G   H  +++        DV VNN 
Sbjct: 135 FMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH---GFGGDVYVNNG 191

Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMI 286
           ++ +Y  CG LDLA +VF  M +R + SWN MI
Sbjct: 192 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 224


>emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
          Length = 583

 Score =  134 bits (338), Expect = 6e-30
 Identities = 63/98 (64%), Positives = 78/98 (79%)
 Frame = +2

Query: 2   FVTALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVN 181
           F  AL LF ++QK FEPDG+T+QS+  AC G+ SL LGMWAHV++L+K +    NDVL+N
Sbjct: 210 FDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLN 269

Query: 182 NSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295
            S++DMYCKCGSL+LA Q+F RM KRDVTSWN MILGF
Sbjct: 270 TSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGF 307



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/81 (38%), Positives = 44/81 (54%)
 Frame = +2

Query: 53  DGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNSVLDMYCKCGSLDLAH 232
           D  T   V+ AC  L +L  G   H  +L+   L   ++V +NNS++  Y  C  LD A 
Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILK---LGFDSBVYINNSLVHFYATCDRLDFAK 183

Query: 233 QVFRRMSKRDVTSWNLMILGF 295
            VF RMS+R + SWN++I  F
Sbjct: 184 GVFDRMSERSLVSWNVVIDAF 204