BLASTX nr result
ID: Coptis24_contig00025615
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025615 (301 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002520160.1| pentatricopeptide repeat-containing protein,... 147 1e-33 ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|2... 139 2e-31 gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana] 134 6e-30 ref|NP_176180.1| pentatricopeptide repeat-containing protein [Ar... 134 6e-30 emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera] 134 6e-30 >ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 330 Score = 147 bits (370), Expect = 1e-33 Identities = 68/100 (68%), Positives = 82/100 (82%) Frame = +2 Query: 2 FVTALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVN 181 F AL+LF+Q+Q+LFEPDG+TMQSV+ AC GL +L LGMW H Y+LRK ++ V DVLV+ Sbjct: 213 FDAALKLFVQLQELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLRKFDVEVTLDVLVD 272 Query: 182 NSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGM 301 N +LDMYCKCGSLD+A QVF RM KRD+TSWN MILGF M Sbjct: 273 NCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAM 312 >ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa] Length = 607 Score = 139 bits (351), Expect = 2e-31 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 2/102 (1%) Frame = +2 Query: 2 FVTALRLFIQVQK-LFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKND-VL 175 F TAL+LF+Q Q+ FEPDG+T+QSVI AC GL +L LGMWAH ++LR C +SV D VL Sbjct: 208 FETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVL 267 Query: 176 VNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGM 301 VNNS+LDMYCKCGSLD+A Q+F M K DVTSWN MILGF M Sbjct: 268 VNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAM 309 Score = 68.2 bits (165), Expect = 7e-10 Identities = 34/82 (41%), Positives = 49/82 (59%) Frame = +2 Query: 50 PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNSVLDMYCKCGSLDLA 229 PD T V+ AC L +L+ G AH ++L+ L ++DV +NNS++ Y CGSL+ A Sbjct: 124 PDNHTFPFVLKACAYLFALFEGKQAHAHLLK---LGFQSDVYINNSLIHFYASCGSLESA 180 Query: 230 HQVFRRMSKRDVTSWNLMILGF 295 VF +M +R + SWN MI F Sbjct: 181 KNVFDKMPQRSLVSWNAMIDAF 202 >gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana] Length = 695 Score = 134 bits (338), Expect = 6e-30 Identities = 61/96 (63%), Positives = 78/96 (81%) Frame = +2 Query: 8 TALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187 +AL+LF ++Q+ FEPDG+TMQSV+ AC GL SL LG WAH ++LRKC++ V DVLV NS Sbjct: 292 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 351 Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295 +++MYCKCGSL +A QVF+ M KRD+ SWN MILGF Sbjct: 352 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 387 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Frame = +2 Query: 23 FIQVQKLFE-----PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187 F+ +K+ E PD T V+ AC + G H +++ DV VNN Sbjct: 192 FMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH---GFGGDVYVNNG 248 Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMI 286 ++ +Y CG LDLA +VF M +R + SWN MI Sbjct: 249 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 281 >ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g59720, mitochondrial; Flags: Precursor gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 638 Score = 134 bits (338), Expect = 6e-30 Identities = 61/96 (63%), Positives = 78/96 (81%) Frame = +2 Query: 8 TALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187 +AL+LF ++Q+ FEPDG+TMQSV+ AC GL SL LG WAH ++LRKC++ V DVLV NS Sbjct: 235 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294 Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295 +++MYCKCGSL +A QVF+ M KRD+ SWN MILGF Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 330 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Frame = +2 Query: 23 FIQVQKLFE-----PDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNS 187 F+ +K+ E PD T V+ AC + G H +++ DV VNN Sbjct: 135 FMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH---GFGGDVYVNNG 191 Query: 188 VLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMI 286 ++ +Y CG LDLA +VF M +R + SWN MI Sbjct: 192 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 224 >emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera] Length = 583 Score = 134 bits (338), Expect = 6e-30 Identities = 63/98 (64%), Positives = 78/98 (79%) Frame = +2 Query: 2 FVTALRLFIQVQKLFEPDGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVN 181 F AL LF ++QK FEPDG+T+QS+ AC G+ SL LGMWAHV++L+K + NDVL+N Sbjct: 210 FDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLN 269 Query: 182 NSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGF 295 S++DMYCKCGSL+LA Q+F RM KRDVTSWN MILGF Sbjct: 270 TSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGF 307 Score = 57.0 bits (136), Expect = 2e-06 Identities = 31/81 (38%), Positives = 44/81 (54%) Frame = +2 Query: 53 DGFTMQSVICACTGLVSLYLGMWAHVYVLRKCELSVKNDVLVNNSVLDMYCKCGSLDLAH 232 D T V+ AC L +L G H +L+ L ++V +NNS++ Y C LD A Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILK---LGFDSBVYINNSLVHFYATCDRLDFAK 183 Query: 233 QVFRRMSKRDVTSWNLMILGF 295 VF RMS+R + SWN++I F Sbjct: 184 GVFDRMSERSLVSWNVVIDAF 204