BLASTX nr result
ID: Coptis24_contig00025534
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025534
(677 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi... 71 3e-22
ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containi... 71 1e-20
ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2... 67 4e-19
ref|XP_003618546.1| Pentatricopeptide repeat-containing protein ... 65 9e-19
ref|XP_002873720.1| pentatricopeptide repeat-containing protein ... 64 4e-15
>ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 71.2 bits (173), Expect(2) = 3e-22
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = -2
Query: 676 AGRKDEADSLRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDV 527
AG+++ A+SLRQ+LK R I KVPGMSSI V G VH FS+GDKSHP+T++V
Sbjct: 467 AGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREV 516
Score = 60.1 bits (144), Expect(2) = 3e-22
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Frame = -1
Query: 443 PQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLDN-VNLKEKERVLFFQ*EVGHL 267
P+T++VY MLDEM +LRL GY PN D+ V +EKE+ LF E +
Sbjct: 511 PRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAI 570
Query: 266 LW------TRMLLHI*RNLKICQDCHCAALKHGHI*NSIVSVLDTHR 144
+ + LHI +NL+ICQDCH A I N + + D +R
Sbjct: 571 CFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNR 617
>ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 71.2 bits (173), Expect(2) = 1e-20
Identities = 32/49 (65%), Positives = 41/49 (83%)
Frame = -2
Query: 673 GRKDEADSLRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDV 527
G+ D+A+SLR++LKNR I KVPGMSSI VDG +H F +GDKSHP+T D+
Sbjct: 465 GKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADI 513
Score = 54.7 bits (130), Expect(2) = 1e-20
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Frame = -1
Query: 443 PQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLDNVN-LKEKERVLFFQ*EVGHL 267
P+T D+Y+ LD+M KLRL GY+PN D + +E E+VLF E L
Sbjct: 508 PRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLAL 567
Query: 266 LWTRML------LHI*RNLKICQDCHCAALKHGHI*NSIVSVLDTHR 144
+ M L I +NL+ICQDCH A I + V D +R
Sbjct: 568 CFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYR 614
>ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1|
predicted protein [Populus trichocarpa]
Length = 636
Score = 67.4 bits (163), Expect(2) = 4e-19
Identities = 30/49 (61%), Positives = 42/49 (85%)
Frame = -2
Query: 673 GRKDEADSLRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDV 527
G++D+A+SLRQILK++ I KVPG+SSI V G +H FS+GDKSHP T+++
Sbjct: 472 GKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEI 520
Score = 53.1 bits (126), Expect(2) = 4e-19
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Frame = -1
Query: 443 PQTQDVYLMLDEMSQKLRLVGYIPN-NXXXXXXXXXXXLDNVNLKEKERVLFFQ*E---- 279
P T+++Y L+ M Q+LRL GY+PN + ++EKE+ LF E
Sbjct: 515 PLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAV 574
Query: 278 -VGHL-LWTRMLLHI*RNLKICQDCHCAALKHGHI*NSIVSVLDTHR 144
GH+ L+I +NL+ICQDCH A I N + + D +R
Sbjct: 575 CFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNR 621
>ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 637
Score = 64.7 bits (156), Expect(2) = 9e-19
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = -2
Query: 676 AGRKDEADSLRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDV 527
+G+ ++A+SLRQ+LK R I KVPGMSSI VDG +H F +GDKSH +T ++
Sbjct: 472 SGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEI 521
Score = 54.7 bits (130), Expect(2) = 9e-19
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Frame = -1
Query: 440 QTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLD-NVNLKEKERVLFFQ*EVGHLL 264
+T ++Y+ LDEM +LR GY+PN D + +L+E E+VLF E L
Sbjct: 517 RTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALC 576
Query: 263 WTRML------LHI*RNLKICQDCHCAALKHGHI*NSIVSVLDTHR 144
+ M LHI +NL+ICQDCH A + + V D +R
Sbjct: 577 FGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYR 622
>ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297319557|gb|EFH49979.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 623
Score = 64.3 bits (155), Expect(2) = 4e-15
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = -2
Query: 673 GRKDEADSLRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDV 527
GR D AD LR L+NR I K+PG+SSI V+ VH FSSGD+SHP+T++V
Sbjct: 466 GRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEV 514
Score = 42.7 bits (99), Expect(2) = 4e-15
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Frame = -1
Query: 443 PQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLDNVNLKEKERVLFFQ*E----V 276
P+T++VYL L+E+ +++R GY+P+ +L+EKE+ L E
Sbjct: 509 PRTKEVYLKLNEVIERIRSAGYVPD------ISGLVSPSEGDLEEKEQALCCHSEKLAVC 562
Query: 275 GHLLWT--RMLLHI*RNLKICQDCHCA 201
LL T R L + +NL+IC+DCH A
Sbjct: 563 FGLLETKPRTPLLVFKNLRICRDCHSA 589