BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025522
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|XP_002531295.1| pentatricopeptide repeat-containing protein,...   120   9e-26
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ...   120   1e-25
ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containi...   119   2e-25
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score =  127 bits (319), Expect = 1e-27
 Identities = 62/95 (65%), Positives = 73/95 (76%)
 Frame = +3

Query: 3   MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLALHGQGKSVLNILEAMQVTNIRPNAVT 182
           MYSKCGCL SAL +F  MK +N+LTWT+MI+GLA HG+GK  L +L+ M    ++PNAVT
Sbjct: 260 MYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVT 319

Query: 183 FTSLLFACGHAGLVNEGLVLFYSMGSGFGVTPTIQ 287
           FTSL  AC HAGLV EGL LF+SM S FGVTP IQ
Sbjct: 320 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQ 354


>ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529128|gb|EEF31108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 313

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +3

Query: 3   MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLALHGQGKSVLNILEAMQVTNIRPNAVT 182
           MYSKCGCL SA+  F  MK+KN LTWT+M +GLA+HG+GK  L +L+ M  + I+PNAVT
Sbjct: 94  MYSKCGCLDSAVKFFVEMKLKNKLTWTAMATGLAIHGKGKETLELLDGMGASGIKPNAVT 153

Query: 183 FTSLLFACGHAGLVNEGLVLFYSMGSGFGVTPTIQ 287
           FTSL  AC H+GLV EGL LF++M   FG+ P IQ
Sbjct: 154 FTSLFSACCHSGLVEEGLHLFHNMKGKFGIEPGIQ 188


>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331126|gb|EFH61545.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 471

 Score =  120 bits (301), Expect = 1e-25
 Identities = 59/95 (62%), Positives = 69/95 (72%)
 Frame = +3

Query: 3   MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLALHGQGKSVLNILEAMQVTNIRPNAVT 182
           MYSKCGCL SA  VF  MK+KN+ TWTSM +GLALHG+G    N+L+ M  + I+PN VT
Sbjct: 265 MYSKCGCLNSAFSVFELMKVKNVFTWTSMATGLALHGRGNETPNLLDRMAESGIKPNEVT 324

Query: 183 FTSLLFACGHAGLVNEGLVLFYSMGSGFGVTPTIQ 287
           FTSLL A  H GLV EG+ LF SM + FGVTP IQ
Sbjct: 325 FTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQ 359


>ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Cucumis sativus]
           gi|449522917|ref|XP_004168472.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g18970-like [Cucumis sativus]
          Length = 318

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/95 (61%), Positives = 69/95 (72%)
 Frame = +3

Query: 3   MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLALHGQGKSVLNILEAMQVTNIRPNAVT 182
           MYSKCG L SA  VF +MK KN+LTWTSM +GLA+HG+GK  L +L+AM    ++PNAVT
Sbjct: 97  MYSKCGLLNSASSVFKQMKQKNVLTWTSMATGLAVHGRGKEALELLDAMGAHGVKPNAVT 156

Query: 183 FTSLLFACGHAGLVNEGLVLFYSMGSGFGVTPTIQ 287
           FTSLL AC H GL+ EGL LF  M   FGV P +Q
Sbjct: 157 FTSLLSACCHGGLIEEGLHLFRVMERKFGVVPQMQ 191


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 595

 Score =  116 bits (290), Expect = 2e-24
 Identities = 57/95 (60%), Positives = 65/95 (68%)
 Frame = +3

Query: 3   MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLALHGQGKSVLNILEAMQVTNIRPNAVT 182
           MYSKCGCL SAL VF RM  KNI+TWT+M +GLA+HG+GK  L +L  M    ++PN  T
Sbjct: 382 MYSKCGCLDSALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEAT 441

Query: 183 FTSLLFACGHAGLVNEGLVLFYSMGSGFGVTPTIQ 287
           FTS L AC H GLV EGL LF  M   FGV P IQ
Sbjct: 442 FTSFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQ 476