BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025471
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    58   2e-09
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    58   3e-09
ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-08
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    46   1e-07
ref|XP_002510612.1| conserved hypothetical protein [Ricinus comm...    59   8e-07

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 57.8 bits (138), Expect(2) = 2e-09
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = +1

Query: 103 IVLGPNNSLSVIASDYPGCRGNCIYFCD----DDMQMINMGHDKGVFDLGSGNIEKICTI 270
           + LG N SLS+ + D+PGC+GNCIY+ D    D+   I    D G+F+L  G+IE +   
Sbjct: 313 LFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCS 372

Query: 271 NSITVCPRPLWFSAN 315
           +     P PLW + N
Sbjct: 373 HFRIRWPPPLWVTPN 387



 Score = 29.6 bits (65), Expect(2) = 2e-09
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 23  YRLT-IRVSKLDFAEHKWVEVKNLGDRALF 109
           YR T  +V +LD    +W  V +LGDRALF
Sbjct: 285 YRTTRFQVCRLDLKAPRWEVVSSLGDRALF 314


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 57.8 bits (138), Expect(2) = 3e-09
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = +1

Query: 103 IVLGPNNSLSVIASDYPGCRGNCIYFCD----DDMQMINMGHDKGVFDLGSGNIEKICTI 270
           + LG N SLS+ + D+PGC+GNCIY+ D    D+   I    D G+F+L  G+IE +   
Sbjct: 313 LFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCS 372

Query: 271 NSITVCPRPLWFSAN 315
           +     P PLW + N
Sbjct: 373 HFRIRWPPPLWVTPN 387



 Score = 28.9 bits (63), Expect(2) = 3e-09
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 23  YRLT-IRVSKLDFAEHKWVEVKNLGDRALF 109
           YR T  +V +LD    +W  V +LGDRALF
Sbjct: 285 YRTTRFQVCRLDSKAPRWEVVSSLGDRALF 314


>ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|222848975|gb|EEE86522.1|
           predicted protein [Populus trichocarpa]
          Length = 462

 Score = 59.7 bits (143), Expect(2) = 2e-08
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
 Frame = +1

Query: 103 IVLGPNNSLSVIASDYPGCRGNCIYFCDDDMQMINM-----GHDKGVFDLGSGNIEKICT 267
           + +G N+S SV+  D PGC  N +YF DD  + +N      GHD GVF+L   +++    
Sbjct: 385 VFVGGNHSASVLTCDLPGCEKNSVYFTDDYWERMNEDYLYGGHDMGVFNLKDKSVKHFYQ 444

Query: 268 INSITVCPRPLWFSANSY 321
           ++++ + P P WF  N +
Sbjct: 445 LDALKIQPPPCWFLPNPW 462



 Score = 24.3 bits (51), Expect(2) = 2e-08
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 47  KLDFAEHKWVEVKNLGDRALF 109
           ++DF +  WV + +L D+A+F
Sbjct: 366 RMDFDKETWVSMTSLDDQAVF 386


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 46.2 bits (108), Expect(2) = 1e-07
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
 Frame = +1

Query: 103 IVLGPNNSLSVIASDYPGCRGNCI------YFCDDDMQMINMGHDKGVFDLGSGNIEKIC 264
           + LG ++S S  ASD+ GC+GN I      +F D +    +     GVFDL SG+I  + 
Sbjct: 305 LFLGDDSSFSARASDFYGCKGNSICFTNISFFSDAEEDDASRSGTIGVFDLDSGSIGPLS 364

Query: 265 TI--NSITVCPRPLWFSANS 318
           +    S T+ P P W S+ S
Sbjct: 365 SYANYSKTIWPPPAWVSSTS 384



 Score = 35.0 bits (79), Expect(2) = 1e-07
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = +2

Query: 5   HKEGENYRLTI------RVSKLDFAEHKWVEVKNLGDRALF 109
           H + E+ R  I      +V +LD  E KWVE+++LGDR LF
Sbjct: 266 HDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESLGDRLLF 306


>ref|XP_002510612.1| conserved hypothetical protein [Ricinus communis]
           gi|223551313|gb|EEF52799.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 402

 Score = 58.5 bits (140), Expect = 8e-07
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
 Frame = +1

Query: 76  GG*KSRRSC----IVLGPNNSLSVIASDYPGCRGNCIYFCDDDMQM----INMGHDKGVF 231
           GG K + S     + LG N SLS+ A DY  C+GNCIYF DD +++    +  GHD G++
Sbjct: 292 GGWKKKESLGDKMLFLGGNGSLSISALDYSKCKGNCIYFTDDYIRLCKDYVWEGHDYGIY 351

Query: 232 DLGSGNIEKI 261
           D+  GNI  +
Sbjct: 352 DIEDGNIRSL 361