BLASTX nr result

ID: Coptis24_contig00025469 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025469
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513329.1| conserved hypothetical protein [Ricinus comm...   102   4e-20
ref|XP_004139838.1| PREDICTED: uncharacterized protein LOC101215...   100   1e-19
ref|XP_002266113.2| PREDICTED: uncharacterized protein LOC100254...   100   2e-19
ref|XP_002316147.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_002311290.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18

>ref|XP_002513329.1| conserved hypothetical protein [Ricinus communis]
           gi|223547237|gb|EEF48732.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 429

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTRR 185
           +SVYFGAAYL+WLSNFE KER+EEFVVR Y+ G KKATHKSTL YW+R LSVK++LP RR
Sbjct: 141 VSVYFGAAYLKWLSNFEQKERSEEFVVRAYKGGIKKATHKSTLHYWKRYLSVKESLPFRR 200

Query: 186 KNIDSDSSVPNDP--TPVVSVTQKTLDLRD 269
              D  S  P  P   P ++ +Q T    D
Sbjct: 201 FVDDGPSVNPCCPPSAPALAASQNTASNSD 230


>ref|XP_004139838.1| PREDICTED: uncharacterized protein LOC101215745 [Cucumis sativus]
          Length = 423

 Score =  100 bits (249), Expect = 1e-19
 Identities = 47/74 (63%), Positives = 60/74 (81%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTRR 185
           +SVYFGAAYL+WLSNFE KER+EEFVVR YR G KKATHK+TL YW+R LSVK++LP+R+
Sbjct: 141 VSVYFGAAYLKWLSNFEQKERSEEFVVRAYRGGTKKATHKTTLPYWKRYLSVKESLPSRK 200

Query: 186 KNIDSDSSVPNDPT 227
              +  +S  + P+
Sbjct: 201 HINEVSTSTTSPPS 214



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTRR 185
           +S+YFGAAYL WLS++EG+ER  +FVV+ Y  GP+      T   W +      N    +
Sbjct: 354 VSMYFGAAYLAWLSDYEGRERTRQFVVQAYIAGPQNVDLPETGPLWLKFEEALSNYEDNK 413

Query: 186 KNIDSDSSV 212
                  S+
Sbjct: 414 SGAQGSCSI 422


>ref|XP_002266113.2| PREDICTED: uncharacterized protein LOC100254368 [Vitis vinifera]
           gi|296082756|emb|CBI21761.3| unnamed protein product
           [Vitis vinifera]
          Length = 422

 Score =  100 bits (248), Expect = 2e-19
 Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTRR 185
           I+VY GAAYL+WLSN++GKER+EEFVVR Y+ GPKKA HKSTL+YW+R LSVK++LP R+
Sbjct: 141 INVYLGAAYLKWLSNYDGKERSEEFVVRAYKGGPKKAAHKSTLEYWKRYLSVKESLPFRK 200

Query: 186 KNID----SDSSVPNDPTPVVSVTQKT 254
              D    +D+S    P  V+     T
Sbjct: 201 SLYDGPYPNDASGSGAPVSVIKGVNHT 227



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYW 143
           IS+YFGAAYL WLS +EG++R  +F+V+ Y  GPK    + T  +W
Sbjct: 354 ISMYFGAAYLAWLSEYEGRQRTPQFIVQAYLAGPKNVNLQETGHHW 399


>ref|XP_002316147.1| predicted protein [Populus trichocarpa] gi|222865187|gb|EEF02318.1|
           predicted protein [Populus trichocarpa]
          Length = 455

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTRR 185
           +SVYFGAAY++WLSNFE +ER+EEFVVR Y  G KKATHKSTL YW+R LSVK++LP+RR
Sbjct: 142 VSVYFGAAYIKWLSNFEEEERSEEFVVRAYNGGTKKATHKSTLQYWKRYLSVKESLPSRR 201

Query: 186 KNIDSDSSVPN--DPTPVVSVTQKTLDLRDSFKGSYKEN 296
             +D   SV N    T   +   +  +   S K  Y  N
Sbjct: 202 -FVDEGPSVNNAHSSTAQAAPATQNTNAPSSEKTGYSRN 239



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYW 143
           +S+YFGAAYL WLS +EG+ER  +FVV  Y  GPK   H+ T   W
Sbjct: 387 VSMYFGAAYLAWLSEYEGRERTPQFVVPAYLSGPKNVNHQETGPLW 432


>ref|XP_002311290.1| predicted protein [Populus trichocarpa] gi|222851110|gb|EEE88657.1|
           predicted protein [Populus trichocarpa]
          Length = 200

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 43/59 (72%), Positives = 51/59 (86%)
 Frame = +3

Query: 6   ISVYFGAAYLRWLSNFEGKERNEEFVVRTYRFGPKKATHKSTLDYWQR*LSVKQNLPTR 182
           +SVYFGAAYL+WLSNFE K R+EEF+VR Y  GPKKATHKSTL YW+R L VK++LP+R
Sbjct: 142 VSVYFGAAYLKWLSNFEKKVRSEEFIVRAYDGGPKKATHKSTLPYWKRYLCVKESLPSR 200


Top