BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025419
         (1033 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   119   9e-25
ref|XP_002893358.1| regulator of chromosome condensation family ...   114   4e-23
ref|NP_174026.1| regulator of chromosome condensation-like prote...   112   2e-22
emb|CBI32027.3| unnamed protein product [Vitis vinifera]              112   2e-22
ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein lig...   110   4e-22

>ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]
          Length = 400

 Score =  119 bits (299), Expect = 9e-25
 Identities = 59/87 (67%), Positives = 65/87 (74%)
 Frame = +3

Query: 21  DDCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAP 200
           ++ R   LEKV GLDG+  V IAAGAEHSALVTEN  I TWGWGEHGQLGLGN  DQI+P
Sbjct: 305 EESREENLEKVQGLDGLNVVQIAAGAEHSALVTENRVIKTWGWGEHGQLGLGNTYDQISP 364

Query: 201 QIVSLDAKLLKVQTLFKVYCGSGFTFA 281
           Q V L  +L    T+ KVYCGSGFTFA
Sbjct: 365 QAVRLGHRLPGQHTMIKVYCGSGFTFA 391


>ref|XP_002893358.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297339200|gb|EFH69617.1|
           regulator of chromosome condensation family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 388

 Score =  114 bits (285), Expect = 4e-23
 Identities = 54/86 (62%), Positives = 67/86 (77%)
 Frame = +3

Query: 24  DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203
           D   ++L KVS  DG+K + IAAGAEHSA VTENGK+ TWGWGEHGQLGLGN  DQ +PQ
Sbjct: 290 DSSEALLAKVSDFDGVKVLQIAAGAEHSAAVTENGKVKTWGWGEHGQLGLGNTNDQTSPQ 349

Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFA 281
           +VS+ +  L+ + + KVYCGSGFT+A
Sbjct: 350 LVSVGSIDLRTKEI-KVYCGSGFTYA 374


>ref|NP_174026.1| regulator of chromosome condensation-like protein [Arabidopsis
           thaliana] gi|124301018|gb|ABN04761.1| At1g27060
           [Arabidopsis thaliana] gi|332192654|gb|AEE30775.1|
           regulator of chromosome condensation-like protein
           [Arabidopsis thaliana]
          Length = 386

 Score =  112 bits (279), Expect = 2e-22
 Identities = 52/88 (59%), Positives = 67/88 (76%)
 Frame = +3

Query: 24  DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203
           D   ++ EKV   DG+K + IAAGAEHSA VTENG++ TWGWGEHGQLGLGN  DQ +P+
Sbjct: 290 DSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQTSPE 349

Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFATE 287
           +VSL +  L+ + + KVYCGSGFT+A +
Sbjct: 350 LVSLGSIDLRTKEI-KVYCGSGFTYAVK 376


>emb|CBI32027.3| unnamed protein product [Vitis vinifera]
          Length = 405

 Score =  112 bits (279), Expect = 2e-22
 Identities = 57/88 (64%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
 Frame = +3

Query: 21  DDCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIM-TWGWGEHGQLGLGNEEDQIA 197
           ++ R   LEKV GLDG+  V IAAGAEHSALVT N  ++ TWGWGEHGQLGLGN  DQI+
Sbjct: 309 EESREENLEKVQGLDGLNVVQIAAGAEHSALVTGNILVIKTWGWGEHGQLGLGNTYDQIS 368

Query: 198 PQIVSLDAKLLKVQTLFKVYCGSGFTFA 281
           PQ V L  +L    T+ KVYCGSGFTFA
Sbjct: 369 PQAVRLGHRLPGQHTMIKVYCGSGFTFA 396


>ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 388

 Score =  110 bits (276), Expect = 4e-22
 Identities = 55/86 (63%), Positives = 65/86 (75%)
 Frame = +3

Query: 24  DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203
           D R   LEKV GLDG K  DIAAGAEHS +VTE+G+I TWGWGEHGQLGLG+  DQ +P 
Sbjct: 300 DLREFNLEKVPGLDGTKITDIAAGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDQTSPV 359

Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFA 281
            VSLD  L +  ++ +V+CGSGFTFA
Sbjct: 360 TVSLDYDLNEAASI-RVFCGSGFTFA 384