BLASTX nr result
ID: Coptis24_contig00025419
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025419 (1033 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2... 119 9e-25 ref|XP_002893358.1| regulator of chromosome condensation family ... 114 4e-23 ref|NP_174026.1| regulator of chromosome condensation-like prote... 112 2e-22 emb|CBI32027.3| unnamed protein product [Vitis vinifera] 112 2e-22 ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein lig... 110 4e-22 >ref|XP_002269566.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Length = 400 Score = 119 bits (299), Expect = 9e-25 Identities = 59/87 (67%), Positives = 65/87 (74%) Frame = +3 Query: 21 DDCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAP 200 ++ R LEKV GLDG+ V IAAGAEHSALVTEN I TWGWGEHGQLGLGN DQI+P Sbjct: 305 EESREENLEKVQGLDGLNVVQIAAGAEHSALVTENRVIKTWGWGEHGQLGLGNTYDQISP 364 Query: 201 QIVSLDAKLLKVQTLFKVYCGSGFTFA 281 Q V L +L T+ KVYCGSGFTFA Sbjct: 365 QAVRLGHRLPGQHTMIKVYCGSGFTFA 391 >ref|XP_002893358.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297339200|gb|EFH69617.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Length = 388 Score = 114 bits (285), Expect = 4e-23 Identities = 54/86 (62%), Positives = 67/86 (77%) Frame = +3 Query: 24 DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203 D ++L KVS DG+K + IAAGAEHSA VTENGK+ TWGWGEHGQLGLGN DQ +PQ Sbjct: 290 DSSEALLAKVSDFDGVKVLQIAAGAEHSAAVTENGKVKTWGWGEHGQLGLGNTNDQTSPQ 349 Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFA 281 +VS+ + L+ + + KVYCGSGFT+A Sbjct: 350 LVSVGSIDLRTKEI-KVYCGSGFTYA 374 >ref|NP_174026.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] gi|124301018|gb|ABN04761.1| At1g27060 [Arabidopsis thaliana] gi|332192654|gb|AEE30775.1| regulator of chromosome condensation-like protein [Arabidopsis thaliana] Length = 386 Score = 112 bits (279), Expect = 2e-22 Identities = 52/88 (59%), Positives = 67/88 (76%) Frame = +3 Query: 24 DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203 D ++ EKV DG+K + IAAGAEHSA VTENG++ TWGWGEHGQLGLGN DQ +P+ Sbjct: 290 DSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQTSPE 349 Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFATE 287 +VSL + L+ + + KVYCGSGFT+A + Sbjct: 350 LVSLGSIDLRTKEI-KVYCGSGFTYAVK 376 >emb|CBI32027.3| unnamed protein product [Vitis vinifera] Length = 405 Score = 112 bits (279), Expect = 2e-22 Identities = 57/88 (64%), Positives = 65/88 (73%), Gaps = 1/88 (1%) Frame = +3 Query: 21 DDCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIM-TWGWGEHGQLGLGNEEDQIA 197 ++ R LEKV GLDG+ V IAAGAEHSALVT N ++ TWGWGEHGQLGLGN DQI+ Sbjct: 309 EESREENLEKVQGLDGLNVVQIAAGAEHSALVTGNILVIKTWGWGEHGQLGLGNTYDQIS 368 Query: 198 PQIVSLDAKLLKVQTLFKVYCGSGFTFA 281 PQ V L +L T+ KVYCGSGFTFA Sbjct: 369 PQAVRLGHRLPGQHTMIKVYCGSGFTFA 396 >ref|XP_003519776.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Length = 388 Score = 110 bits (276), Expect = 4e-22 Identities = 55/86 (63%), Positives = 65/86 (75%) Frame = +3 Query: 24 DCRLSILEKVSGLDGIKAVDIAAGAEHSALVTENGKIMTWGWGEHGQLGLGNEEDQIAPQ 203 D R LEKV GLDG K DIAAGAEHS +VTE+G+I TWGWGEHGQLGLG+ DQ +P Sbjct: 300 DLREFNLEKVPGLDGTKITDIAAGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDQTSPV 359 Query: 204 IVSLDAKLLKVQTLFKVYCGSGFTFA 281 VSLD L + ++ +V+CGSGFTFA Sbjct: 360 TVSLDYDLNEAASI-RVFCGSGFTFA 384