BLASTX nr result

ID: Coptis24_contig00025373 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025373
         (710 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    45   3e-10
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    45   3e-10
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               44   1e-08
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    44   1e-08
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    44   2e-08

>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score = 45.4 bits (106), Expect(3) = 3e-10
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +1

Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
           LTEPGTLFKNLM +  D+V+ YDGT+ NV
Sbjct: 806 LTEPGTLFKNLMAILRDVVICYDGTVRNV 834



 Score = 36.2 bits (82), Expect(3) = 3e-10
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
           ++++ ++ PS   GL+K CFFHGL+   E++VHS
Sbjct: 760 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 792



 Score = 28.1 bits (61), Expect(3) = 3e-10
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 252 SINMEVEQIGFFGIQLAD*G 311
           +IN  V+QIGF G+QL+D G
Sbjct: 722 AINKVVQQIGFLGLQLSDKG 741


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score = 45.4 bits (106), Expect(3) = 3e-10
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +1

Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
           LTEPGTLFKNLM +  D+V+ YDGT+ NV
Sbjct: 776 LTEPGTLFKNLMAILRDVVICYDGTVRNV 804



 Score = 36.2 bits (82), Expect(3) = 3e-10
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
           ++++ ++ PS   GL+K CFFHGL+   E++VHS
Sbjct: 730 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 762



 Score = 28.1 bits (61), Expect(3) = 3e-10
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 252 SINMEVEQIGFFGIQLAD*G 311
           +IN  V+QIGF G+QL+D G
Sbjct: 692 AINKVVQQIGFLGLQLSDKG 711


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 43.9 bits (102), Expect(3) = 1e-08
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
           L+EPGTLFKNLM +  D+V+ YDGT+ NV
Sbjct: 836 LSEPGTLFKNLMAILRDVVICYDGTVRNV 864



 Score = 35.8 bits (81), Expect(3) = 1e-08
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
           + +  +G + PS   GLI++CFFHGL+   E++VHS
Sbjct: 788 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 822



 Score = 24.6 bits (52), Expect(3) = 1e-08
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 252 SINMEVEQIGFFGIQLAD*G 311
           +IN  V+QIGF G QL++ G
Sbjct: 752 AINKVVQQIGFLGQQLSEKG 771


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 43.9 bits (102), Expect(3) = 1e-08
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
           L+EPGTLFKNLM +  D+V+ YDGT+ NV
Sbjct: 776 LSEPGTLFKNLMAILRDVVICYDGTVRNV 804



 Score = 35.8 bits (81), Expect(3) = 1e-08
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
           + +  +G + PS   GLI++CFFHGL+   E++VHS
Sbjct: 728 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 762



 Score = 24.6 bits (52), Expect(3) = 1e-08
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 252 SINMEVEQIGFFGIQLAD*G 311
           +IN  V+QIGF G QL++ G
Sbjct: 692 AINKVVQQIGFLGQQLSEKG 711


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 43.9 bits (102), Expect(3) = 2e-08
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
           L+EPGTLFKNLM +  D+V+ YDGT+ NV
Sbjct: 778 LSEPGTLFKNLMAILRDVVICYDGTVRNV 806



 Score = 35.4 bits (80), Expect(3) = 2e-08
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +2

Query: 329 FTSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
           F S   + ++ PS   GLI++CFFHGL+   E++VHS
Sbjct: 729 FESKYPSDIDYPSAKHGLIQSCFFHGLD-PYEEMVHS 764



 Score = 24.6 bits (52), Expect(3) = 2e-08
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 267 VEQIGFFGIQLAD*GHDLTLPL 332
           V+QIGF G+Q++D G   T  L
Sbjct: 700 VQQIGFLGLQISDRGKFYTKTL 721


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