BLASTX nr result
ID: Coptis24_contig00025373
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025373
(710 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 45 3e-10
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 45 3e-10
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 44 1e-08
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 44 1e-08
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 44 2e-08
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
subunit 1-like [Cucumis sativus]
Length = 2019
Score = 45.4 bits (106), Expect(3) = 3e-10
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
LTEPGTLFKNLM + D+V+ YDGT+ NV
Sbjct: 806 LTEPGTLFKNLMAILRDVVICYDGTVRNV 834
Score = 36.2 bits (82), Expect(3) = 3e-10
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
++++ ++ PS GL+K CFFHGL+ E++VHS
Sbjct: 760 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 792
Score = 28.1 bits (61), Expect(3) = 3e-10
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 252 SINMEVEQIGFFGIQLAD*G 311
+IN V+QIGF G+QL+D G
Sbjct: 722 AINKVVQQIGFLGLQLSDKG 741
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 45.4 bits (106), Expect(3) = 3e-10
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
LTEPGTLFKNLM + D+V+ YDGT+ NV
Sbjct: 776 LTEPGTLFKNLMAILRDVVICYDGTVRNV 804
Score = 36.2 bits (82), Expect(3) = 3e-10
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
++++ ++ PS GL+K CFFHGL+ E++VHS
Sbjct: 730 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 762
Score = 28.1 bits (61), Expect(3) = 3e-10
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 252 SINMEVEQIGFFGIQLAD*G 311
+IN V+QIGF G+QL+D G
Sbjct: 692 AINKVVQQIGFLGLQLSDKG 711
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 43.9 bits (102), Expect(3) = 1e-08
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
L+EPGTLFKNLM + D+V+ YDGT+ NV
Sbjct: 836 LSEPGTLFKNLMAILRDVVICYDGTVRNV 864
Score = 35.8 bits (81), Expect(3) = 1e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
+ + +G + PS GLI++CFFHGL+ E++VHS
Sbjct: 788 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 822
Score = 24.6 bits (52), Expect(3) = 1e-08
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 252 SINMEVEQIGFFGIQLAD*G 311
+IN V+QIGF G QL++ G
Sbjct: 752 AINKVVQQIGFLGQQLSEKG 771
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 43.9 bits (102), Expect(3) = 1e-08
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
L+EPGTLFKNLM + D+V+ YDGT+ NV
Sbjct: 776 LSEPGTLFKNLMAILRDVVICYDGTVRNV 804
Score = 35.8 bits (81), Expect(3) = 1e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
+ + +G + PS GLI++CFFHGL+ E++VHS
Sbjct: 728 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 762
Score = 24.6 bits (52), Expect(3) = 1e-08
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 252 SINMEVEQIGFFGIQLAD*G 311
+IN V+QIGF G QL++ G
Sbjct: 692 AINKVVQQIGFLGQQLSEKG 711
>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 991
Score = 43.9 bits (102), Expect(3) = 2e-08
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618
L+EPGTLFKNLM + D+V+ YDGT+ NV
Sbjct: 778 LSEPGTLFKNLMAILRDVVICYDGTVRNV 806
Score = 35.4 bits (80), Expect(3) = 2e-08
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 329 FTSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439
F S + ++ PS GLI++CFFHGL+ E++VHS
Sbjct: 729 FESKYPSDIDYPSAKHGLIQSCFFHGLD-PYEEMVHS 764
Score = 24.6 bits (52), Expect(3) = 2e-08
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VEQIGFFGIQLAD*GHDLTLPL 332
V+QIGF G+Q++D G T L
Sbjct: 700 VQQIGFLGLQISDRGKFYTKTL 721