BLASTX nr result
ID: Coptis24_contig00025373
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025373 (710 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 45 3e-10 ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 45 3e-10 emb|CBI40152.3| unnamed protein product [Vitis vinifera] 44 1e-08 ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 44 1e-08 ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 44 2e-08 >ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 2019 Score = 45.4 bits (106), Expect(3) = 3e-10 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = +1 Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618 LTEPGTLFKNLM + D+V+ YDGT+ NV Sbjct: 806 LTEPGTLFKNLMAILRDVVICYDGTVRNV 834 Score = 36.2 bits (82), Expect(3) = 3e-10 Identities = 15/34 (44%), Positives = 25/34 (73%) Frame = +2 Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439 ++++ ++ PS GL+K CFFHGL+ E++VHS Sbjct: 760 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 792 Score = 28.1 bits (61), Expect(3) = 3e-10 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3 Query: 252 SINMEVEQIGFFGIQLAD*G 311 +IN V+QIGF G+QL+D G Sbjct: 722 AINKVVQQIGFLGLQLSDKG 741 >ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 1959 Score = 45.4 bits (106), Expect(3) = 3e-10 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = +1 Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618 LTEPGTLFKNLM + D+V+ YDGT+ NV Sbjct: 776 LTEPGTLFKNLMAILRDVVICYDGTVRNV 804 Score = 36.2 bits (82), Expect(3) = 3e-10 Identities = 15/34 (44%), Positives = 25/34 (73%) Frame = +2 Query: 338 FAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439 ++++ ++ PS GL+K CFFHGL+ E++VHS Sbjct: 730 YSSDKIDYPSAEFGLVKGCFFHGLD-PYEEMVHS 762 Score = 28.1 bits (61), Expect(3) = 3e-10 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3 Query: 252 SINMEVEQIGFFGIQLAD*G 311 +IN V+QIGF G+QL+D G Sbjct: 692 AINKVVQQIGFLGLQLSDKG 711 >emb|CBI40152.3| unnamed protein product [Vitis vinifera] Length = 1890 Score = 43.9 bits (102), Expect(3) = 1e-08 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = +1 Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618 L+EPGTLFKNLM + D+V+ YDGT+ NV Sbjct: 836 LSEPGTLFKNLMAILRDVVICYDGTVRNV 864 Score = 35.8 bits (81), Expect(3) = 1e-08 Identities = 16/36 (44%), Positives = 25/36 (69%) Frame = +2 Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439 + + +G + PS GLI++CFFHGL+ E++VHS Sbjct: 788 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 822 Score = 24.6 bits (52), Expect(3) = 1e-08 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 252 SINMEVEQIGFFGIQLAD*G 311 +IN V+QIGF G QL++ G Sbjct: 752 AINKVVQQIGFLGQQLSEKG 771 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 43.9 bits (102), Expect(3) = 1e-08 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = +1 Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618 L+EPGTLFKNLM + D+V+ YDGT+ NV Sbjct: 776 LSEPGTLFKNLMAILRDVVICYDGTVRNV 804 Score = 35.8 bits (81), Expect(3) = 1e-08 Identities = 16/36 (44%), Positives = 25/36 (69%) Frame = +2 Query: 332 TSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439 + + +G + PS GLI++CFFHGL+ E++VHS Sbjct: 728 SKYPFHGADYPSGEFGLIRSCFFHGLD-PYEEMVHS 762 Score = 24.6 bits (52), Expect(3) = 1e-08 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 252 SINMEVEQIGFFGIQLAD*G 311 +IN V+QIGF G QL++ G Sbjct: 692 AINKVVQQIGFLGQQLSEKG 711 >ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis] gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase, putative [Ricinus communis] Length = 991 Score = 43.9 bits (102), Expect(3) = 2e-08 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = +1 Query: 532 LTEPGTLFKNLMTVPGDIVLRYDGTMSNV 618 L+EPGTLFKNLM + D+V+ YDGT+ NV Sbjct: 778 LSEPGTLFKNLMAILRDVVICYDGTVRNV 806 Score = 35.4 bits (80), Expect(3) = 2e-08 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +2 Query: 329 FTSFAANGVESPSEASGLIKNCFFHGLNAACEDLVHS 439 F S + ++ PS GLI++CFFHGL+ E++VHS Sbjct: 729 FESKYPSDIDYPSAKHGLIQSCFFHGLD-PYEEMVHS 764 Score = 24.6 bits (52), Expect(3) = 2e-08 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 267 VEQIGFFGIQLAD*GHDLTLPL 332 V+QIGF G+Q++D G T L Sbjct: 700 VQQIGFLGLQISDRGKFYTKTL 721