BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025356
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512730.1| pentatricopeptide repeat-containing protein,...   132   2e-29
ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28
ref|XP_003542138.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CBI25186.3| unnamed protein product [Vitis vinifera]              125   4e-27

>ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547741|gb|EEF49233.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 552

 Score =  132 bits (333), Expect = 2e-29
 Identities = 57/77 (74%), Positives = 68/77 (88%)
 Frame = -2

Query: 233 KNLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCLMPDAVSYSHMISCFSRVGDL 54
           K L PL TE FN+ILNGWC+I ++L+EAKRVWREMS CC+ P+A SY+HMISCFS+VG+L
Sbjct: 251 KKLFPLETEGFNVILNGWCSICVNLLEAKRVWREMSKCCITPNATSYTHMISCFSKVGNL 310

Query: 53  FHSLRLYDEMKKRGWIP 3
           F SLRLYDEMKKRGW+P
Sbjct: 311 FDSLRLYDEMKKRGWLP 327


>ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
           gi|449509164|ref|XP_004163514.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score =  130 bits (326), Expect = 1e-28
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = -2

Query: 233 KNLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCLMPDAVSYSHMISCFSRVGDL 54
           K L PL TE+FNIILNGWCN+++D+ EAKR+WREMS CC++PD+ SY+HMISCFS+ G+L
Sbjct: 243 KKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNGNL 302

Query: 53  FHSLRLYDEMKKRGWIP 3
           F SLR YD+MKKR WIP
Sbjct: 303 FDSLRFYDQMKKRDWIP 319


>ref|XP_003542138.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Glycine max]
          Length = 504

 Score =  127 bits (318), Expect = 1e-27
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = -2

Query: 233 KNLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCLMPDAVSYSHMISCFSRVGDL 54
           K L PL TE+FNIILNGWCNI+ D+ EAKRVWREMS  C+ P+A SYS+MISCFS  G+L
Sbjct: 216 KKLFPLNTESFNIILNGWCNITKDVYEAKRVWREMSKYCITPNATSYSYMISCFSNEGNL 275

Query: 53  FHSLRLYDEMKKRGWIP 3
           F SLRLYD+MKKRGWIP
Sbjct: 276 FDSLRLYDQMKKRGWIP 292


>ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Vitis vinifera]
          Length = 537

 Score =  125 bits (314), Expect = 4e-27
 Identities = 54/77 (70%), Positives = 66/77 (85%)
 Frame = -2

Query: 233 KNLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCLMPDAVSYSHMISCFSRVGDL 54
           K L PL TE FNIILNGW N+SLD+ EAKR+WREMS CC++P+A +Y+ MISCFS+ G+L
Sbjct: 239 KKLFPLETEGFNIILNGWSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNL 298

Query: 53  FHSLRLYDEMKKRGWIP 3
           F SLRL+D+MKKRGWIP
Sbjct: 299 FDSLRLFDDMKKRGWIP 315


>emb|CBI25186.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  125 bits (314), Expect = 4e-27
 Identities = 54/77 (70%), Positives = 66/77 (85%)
 Frame = -2

Query: 233 KNLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCLMPDAVSYSHMISCFSRVGDL 54
           K L PL TE FNIILNGW N+SLD+ EAKR+WREMS CC++P+A +Y+ MISCFS+ G+L
Sbjct: 239 KKLFPLETEGFNIILNGWSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNL 298

Query: 53  FHSLRLYDEMKKRGWIP 3
           F SLRL+D+MKKRGWIP
Sbjct: 299 FDSLRLFDDMKKRGWIP 315