BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025240
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containi...    78   9e-13
ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containi...    75   6e-12
ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08

>ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = -3

Query: 223 QFKEIHAYFLKSHYP--PLSIAHLLSITTIPGNAHLFVHARSIFNNLIHRNTFMYNTMIR 50
           Q K+IHA  L+SH P  P +I  LLS+     N   F HA  IF NL  RN FMYN+MIR
Sbjct: 26  QLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIFQNLSLRNIFMYNSMIR 85

Query: 49  GFFQTHSPVTAVCCYL 2
           G+  +HSP  A+ CYL
Sbjct: 86  GYVLSHSPTRAILCYL 101


>ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 526

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
 Frame = -3

Query: 223 QFKEIHAYFLKSHY--PPLSIAHLLSITTIPGNAHLFVHARSIFNNLIHRNTFMYNTMIR 50
           Q K++HA+ L+      P ++A LLS+     +A  F +ARSIF +L +RNTFM+NTMIR
Sbjct: 20  QLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIR 79

Query: 49  GFFQTHSPVTAVCCYL 2
           G+ Q  SP+ AV CYL
Sbjct: 80  GYLQCRSPLHAVSCYL 95


>ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 487

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
 Frame = -3

Query: 217 KEIHAYFLKSHYP--PLSIAHLLSITTIPG--NAHLFVHARSIFNNLIHRNTFMYNTMIR 50
           K+IHA+ L ++ P  P +IA LL +    G      F +A  IF NL  RN FMYN+MIR
Sbjct: 24  KQIHAHLLMTYLPQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYNSMIR 83

Query: 49  GFFQTHSPVTAVCCYL 2
           G+F +  P  A+ CYL
Sbjct: 84  GYFLSRFPKQAILCYL 99


>ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 528

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
 Frame = -3

Query: 217 KEIHAYFLKSHYP--PLSIAHLLSITTIPG--NAHLFVHARSIFNNLIHRNTFMYNTMIR 50
           K+IHA+ LK++    P +IA LL +    G      F +A  IF NL  RN FMYN+MIR
Sbjct: 24  KQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYNSMIR 83

Query: 49  GFFQTHSPVTAVCCYL 2
           G+F +  P  A+ CYL
Sbjct: 84  GYFLSRFPKQAILCYL 99