BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025222
         (771 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containi...    93   6e-17
ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containi...    84   4e-14
ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|2...    70   5e-10
ref|XP_002527661.1| pentatricopeptide repeat-containing protein,...    70   7e-10
ref|XP_003612846.1| Pentatricopeptide repeat-containing protein ...    67   6e-09

>ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
           gi|297742067|emb|CBI33854.3| unnamed protein product
           [Vitis vinifera]
          Length = 767

 Score = 93.2 bits (230), Expect = 6e-17
 Identities = 47/101 (46%), Positives = 65/101 (64%)
 Frame = +3

Query: 468 KPTLFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYCL 647
           K  L P++V+VF +L+  V R + FS  + KYGF  SI +F  +V++ + AGMH +VY L
Sbjct: 87  KHVLSPVVVKVFKSLNWEVARHIKFSTTMKKYGFSRSIDAFRTVVNVLALAGMHMEVYAL 146

Query: 648 LMEIVLYYERVGYDTFALFPTLLELSNGVERSLAVFDVLMK 770
           L +IV YY +V  D F LFP LLE      RS+ VFD+L+K
Sbjct: 147 LRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIK 187


>ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score = 83.6 bits (205), Expect = 4e-14
 Identities = 47/97 (48%), Positives = 60/97 (61%)
 Frame = +3

Query: 477 LFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYCLLME 656
           LFPL+ RVF +L   V R+  F   V+ +GF HSIS F I+VH F+ AGM  +V+ LL +
Sbjct: 158 LFPLVSRVFKSLSWSVARKKKFGNWVECHGFSHSISCFRIIVHAFALAGMRLEVWALLRD 217

Query: 657 IVLYYERVGYDTFALFPTLLELSNGVERSLAVFDVLM 767
           IV +     YDTF LF   L+    VERS  VFDVL+
Sbjct: 218 IVGFCNEAKYDTFELFSAFLDSPQHVERSGVVFDVLI 254


>ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|222833858|gb|EEE72335.1|
           predicted protein [Populus trichocarpa]
          Length = 697

 Score = 70.1 bits (170), Expect = 5e-10
 Identities = 39/111 (35%), Positives = 62/111 (55%)
 Frame = +3

Query: 438 IEEFKLRKGNKPTLFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSS 617
           +   K +   +  L  L+V +  TL+  V R+V FS +V+ YGF +SI++F  +VH+F+ 
Sbjct: 13  VPRIKFKNPKRCELSRLVVELLKTLNWEVARQVKFSKSVNVYGFFYSINAFRTIVHVFAL 72

Query: 618 AGMHNQVYCLLMEIVLYYERVGYDTFALFPTLLELSNGVERSLAVFDVLMK 770
           AG+  +   LL +IV YY+    +   LF T L+    V RS  V  +L+K
Sbjct: 73  AGLQREAQYLLTDIVFYYKEENLNVSGLFSTFLDSPECVGRSATVLSLLIK 123


>ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532966|gb|EEF34732.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 766

 Score = 69.7 bits (169), Expect = 7e-10
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
 Frame = +3

Query: 450 KLRKGN----KPTLFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSS 617
           K RK N    K  LFP ++ VF TL+  +     F  AV  +GF HSI +F I++H+ +S
Sbjct: 74  KARKPNSCPRKRGLFPFVLTVFKTLNWKLATHTNFFKAVSFHGFSHSIYAFKIIIHVLAS 133

Query: 618 AGMHNQVYCLLMEIVLYYERVGYDTFALFPTLLELSNGVER--SLAVFDVLMK 770
           AG+  +V   L +I+ YY+ V  D   LF TLL+         S+ V +VL+K
Sbjct: 134 AGLQMEVQIFLRDIISYYKEVNLDVSELFSTLLDSPQDAHMGGSIIVANVLIK 186


>ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355514181|gb|AES95804.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = +3

Query: 429 EEPIEEFKLRKGNKPTLFPLLV-RVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVH 605
           E PI    L K    T  P LV +VF TL+  V R + F   V  +GF +SI+SF I++H
Sbjct: 36  ETPIFNTPLPKTT--TKLPRLVSKVFKTLNWGVAREIKFKGCVQIHGFENSINSFSIIIH 93

Query: 606 MFSSAGMHNQVYCLLMEIVLYYERVGYDTFALFPTLLELSNGVERSLAVFDVLMK 770
            ++ AGM  +V+ L+ +IV +Y+    D   L   LL+    VE+S  VFD+L+K
Sbjct: 94  TYALAGMSWEVFILIRDIVTFYKEENRDAGELVSLLLD----VEKSNVVFDMLIK 144