BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025194
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CBI30808.3| unnamed protein product [Vitis vinifera]              121   7e-26
ref|XP_002519753.1| pentatricopeptide repeat-containing protein,...   119   2e-25
ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24

>ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/98 (58%), Positives = 72/98 (73%)
 Frame = +3

Query: 45  TYSLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPV 224
           T+S  S    HL+  +I EA  +F+K+  P+VYLYTM+IT Y +    + AL++F +MPV
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 225 KDIVSWNSMIKGCLSCGDLDMARKLFDEMPGRNVVSWT 338
           KD+VSWNSMIKGC  C DL MARKLFDEMP R+VVSWT
Sbjct: 71  KDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWT 108



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/83 (33%), Positives = 46/83 (55%)
 Frame = +3

Query: 78  LKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKDIVSWNSMIK 257
           L+  KI+ A  +F K+P  ++  +  +I  Y   G + + LR+F +MP ++++SW SMI 
Sbjct: 115 LQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIG 174

Query: 258 GCLSCGDLDMARKLFDEMPGRNV 326
           G    G  + A  LF +M G  V
Sbjct: 175 GLDQHGRSEEALGLFRQMMGCGV 197


>emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  121 bits (303), Expect = 7e-26
 Identities = 54/88 (61%), Positives = 68/88 (77%)
 Frame = +3

Query: 75  HLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKDIVSWNSMI 254
           HL+  +I EA  +F+K+  P+VYLYTM+IT Y +    + AL++F +MPVKD+VSWNSMI
Sbjct: 5   HLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMI 64

Query: 255 KGCLSCGDLDMARKLFDEMPGRNVVSWT 338
           KGC  C DL MARKLFDEMP R+VVSWT
Sbjct: 65  KGCFDCADLTMARKLFDEMPERSVVSWT 92



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/83 (33%), Positives = 46/83 (55%)
 Frame = +3

Query: 78  LKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKDIVSWNSMIK 257
           L+  KI+ A  +F K+P  ++  +  +I  Y   G + + LR+F +MP ++++SW SMI 
Sbjct: 99  LQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIG 158

Query: 258 GCLSCGDLDMARKLFDEMPGRNV 326
           G    G  + A  LF +M G  V
Sbjct: 159 GLDQHGRSEEALGLFRQMMGCGV 181


>ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541170|gb|EEF42726.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 562

 Score =  119 bits (299), Expect = 2e-25
 Identities = 54/87 (62%), Positives = 67/87 (77%)
 Frame = +3

Query: 78  LKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKDIVSWNSMIK 257
           LK  K+ +A  +F KIPSP  YL T++I  Y + G +N+AL +F+ M V+DI+SWNSMIK
Sbjct: 119 LKNQKLDQARFLFAKIPSPEAYLCTLMINGYARSGRLNDALMLFDRMTVRDIISWNSMIK 178

Query: 258 GCLSCGDLDMARKLFDEMPGRNVVSWT 338
           GCL CGDL MAR+LFDEMP RNVVSWT
Sbjct: 179 GCLDCGDLGMARRLFDEMPERNVVSWT 205



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
 Frame = +3

Query: 51  SLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKD 230
           S +S  +  L    +  A ++F+++P  NV  +T ++  Y + G +  A R F DMPV+D
Sbjct: 172 SWNSMIKGCLDCGDLGMARRLFDEMPERNVVSWTTMVNGYLKFGRVEIAERFFWDMPVRD 231

Query: 231 IVSWNSMIKGCLSCGDLDMA--RKLFDEMPGRNVVSWT 338
           + +WN+MI G   CG+  +A    LF++MP RNV+SWT
Sbjct: 232 VAAWNAMIFG--YCGNRRIADGLNLFEKMPCRNVISWT 267


>ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|222875393|gb|EEF12524.1|
           predicted protein [Populus trichocarpa]
          Length = 675

 Score =  119 bits (298), Expect = 3e-25
 Identities = 53/100 (53%), Positives = 73/100 (73%)
 Frame = +3

Query: 39  TPTYSLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDM 218
           T T S  +    HLK  ++ +A  IF+KIPSPN++LYT +I  Y +   + +AL++F+ M
Sbjct: 10  TITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRM 69

Query: 219 PVKDIVSWNSMIKGCLSCGDLDMARKLFDEMPGRNVVSWT 338
            V+D+VSWNSMIKGCL CG+L MA +LFDEMP +NV+SWT
Sbjct: 70  SVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWT 109



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/96 (35%), Positives = 58/96 (60%)
 Frame = +3

Query: 51  SLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKD 230
           S +S  +  L    +  A ++F+++P  NV  +T ++  Y + G +  A R+F DM VKD
Sbjct: 76  SWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKD 135

Query: 231 IVSWNSMIKGCLSCGDLDMARKLFDEMPGRNVVSWT 338
           + +WN+M+ G    G ++   +LF+EMP R+V+SWT
Sbjct: 136 VAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWT 171



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/79 (30%), Positives = 47/79 (59%)
 Frame = +3

Query: 75  HLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKDIVSWNSMI 254
           +LK  +++ A ++F  +   +V  +  ++  Y++ G + E +R+F +MPV+D++SW SMI
Sbjct: 115 YLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMI 174

Query: 255 KGCLSCGDLDMARKLFDEM 311
            G    G  + A  +F +M
Sbjct: 175 GGLDLNGKSEEALFVFKKM 193


>ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
           gi|449533166|ref|XP_004173548.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/101 (54%), Positives = 72/101 (71%)
 Frame = +3

Query: 36  TTPTYSLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFND 215
           TTP  +    F  HL+  +I EA  +FNK+ SP V LYTM+I  Y  +G + +AL++F +
Sbjct: 49  TTPPSNYLLSF--HLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYE 106

Query: 216 MPVKDIVSWNSMIKGCLSCGDLDMARKLFDEMPGRNVVSWT 338
           MPVKD++SWNSM+KGCL CGDL MA  +FD+M  RNVVSWT
Sbjct: 107 MPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWT 147



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 36/96 (37%), Positives = 56/96 (58%)
 Frame = +3

Query: 51  SLDSEFRKHLKTNKIKEAHQIFNKIPSPNVYLYTMLITSYYQKGEINEALRVFNDMPVKD 230
           S +S  +  LK   +  A  +F+K+   NV  +T +I    + G +  A  +F  MP KD
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 231 IVSWNSMIKGCLSCGDLDMARKLFDEMPGRNVVSWT 338
           + +WNSM+ G  S G ++ A +LF++MP RNV+SWT
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWT 209